On the Mac, libgsl is included with Freesurfer in the directory /Applications/freesurfer/lib/gsl. Can you confirm that your LD_LIBRARY_PATH and DYLD_LIBRARY_PATH environment variables contain those paths? That is, examine the output of:
env | grep LD_LIBRARY Also, make sure that these vars do not contain paths to the other versions of GSL. You can make sure of this by typing: unsetenv LD_LIBRARY_PATH unsetenv DYLD_LIBRARY_PATH before 'sourcing' the Freesurfer setup script. On Sat, 2006-07-29 at 23:36 +0200, Charles-Henri Malbert wrote: > Dear collegue, > > > I was using Freesurfer 0.9 and I try to install freesurfer 3. > > > The install went smoothly and I update the cshrc file. The launch of > Xterm went fine and the postinstall generate no errors (i.e. the GSL > lib was found at GSL_DIR). When trying to test the install > using tkmedit bert orig.mgz an error was generated saying that the GSL > lib was not found at pubsw (dyld: Library not > loaded: /usr/pubsw/packages/gsl/1.6/lib/libgsl.0.dylib). Indeed no > pubsw folder was found at usr. > > > I was using fink and gsl was already installed in sw folder as part of > Amide installation (a gnu front end of Xmedcon). May be the problem > was arround there? > > > What's the problem > > > Thanks in advance > > Charles-Henri Malbert > DMV, Dr es Sci, HDR > Directeur de Recherches > UMR SENAH > 35590 Saint-Gilles > Tel: 02 23 48 50 71 > Fax: 02 23 48 50 80 > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
