Hi Derin,
the subcortical segmentation will fail unless you correct it, as the
registration will try and align a model with a cerebellum to a brain
without one.
sorry.
Bruce
On Mon, 7 Aug 2006, Derin Cobia wrote:
Hello,
After having run -autorecon1 on all of my subjects I've noticed
skullstripping has edited out the cerebellum/brainstem on some, but not on
others. Because I'm not interested in these structures, can I just leave
the files as is (i.e.-not bother adjusting the wsthreshold level,
re-running, etc)? Or will I run into problems with the -autorecon2 & 3
processing streams down the line? Thanks again!
-Derin
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