I updated the ports after the reboot and did a 'portupgrade -af' after the kernel update, restart, etc. I had no issues performing the upgrade according to the handbook and the System State Comparison seems OK...

Did you do the whole

mergemaster -p
make buildworld
make buildkernel
make installkernel
reboot & test
make installworld
mergemaster

sequence?

As you tell about ending the process at reboot, I have a gut feeling that your userland is not up to date with kernel and the make installworld step is missing...

-Reko
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