https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=243497
Bug ID: 243497
Summary: [patch] math/py-numpy build fails with OpenBlas
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Only Me
Priority: ---
Component: Individual Port(s)
Assignee: pyt...@freebsd.org
Reporter: rsm...@xs4all.nl
Flags: maintainer-feedback?(pyt...@freebsd.org)
Assignee: pyt...@freebsd.org
Attachment #210941 text/plain
mime type:
Created attachment 210941
--> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=210941&action=edit
Updated files/patch-numpy-distutils-system_info.py
TL;DR
* Problem: Compiling py37-numpy-1.16.5_3,1 with OpenBlas fails in
numpy/distutils/system_info.py with an uncaught distutils.errors.LinkError
exception.
* Solution: also catch distutils.errors.LinkError on line 1742 of
numpy/distutils/system_info.py.
This is the error (only the last part shown for clarity).
File
"/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py",
line 1740, in has_cblas
extra_postargs=info.get('extra_link_args', []))
File "/usr/local/lib/python3.7/distutils/ccompiler.py", line 734, in
link_executable
debug, extra_preargs, extra_postargs, None, target_lang)
File "/usr/local/lib/python3.7/distutils/unixccompiler.py", line 206, in
link
raise LinkError(msg)
distutils.errors.LinkError: Command "cc
/tmp/tmpm3gnb0ev/tmp/tmpm3gnb0ev/source.o -L/usr/local/lib -lblas -o
/tmp/tmpm3gnb0ev/a.out" failed with exit status 1
*** Error code 1
Stop.
make[1]: stopped in /usr/ports/math/py-numpy
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-numpy
This is the relevant code:
try:
with open(src, 'wt') as f:
f.write(s)
try:
# check we can compile (find headers)
obj = c.compile([src], output_dir=tmpdir,
include_dirs=self.get_include_dirs())
# check we can link (find library)
# some systems have separate cblas and blas libs. First
# check for cblas lib, and if not present check for blas lib.
try:
c.link_executable(obj, os.path.join(tmpdir, "a.out"),
libraries=["cblas"],
library_dirs=info['library_dirs'],
extra_postargs=info.get('extra_link_args', []))
res = "cblas"
except distutils.ccompiler.LinkError:
c.link_executable(obj, os.path.join(tmpdir, "a.out"),
libraries=["blas"],
library_dirs=info['library_dirs'],
extra_postargs=info.get('extra_link_args', []))
res = "blas"
except distutils.ccompiler.CompileError:
res = None
finally:
shutil.rmtree(tmpdir)
return res
If linking with “cblas” fails, it tries again by linking with “blas”.
However, the last “except” only handles a compilation error but not a linking
error.
When we change:
except distutils.ccompiler.CompileError:
to
except (distutils.ccompiler.CompileError,
distutils.ccompiler.LinkError):
the problem is fixed.
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