https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=217968
Bug ID: 217968
Summary: math/py-numpy: Possible regression with fortran
linkage
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Only Me
Priority: ---
Component: Individual Port(s)
Assignee: pyt...@freebsd.org
Reporter: bacon4...@gmail.com
Assignee: pyt...@freebsd.org
Flags: maintainer-feedback?(pyt...@freebsd.org)
The following error started appearing since running pkg upgrade this morning.
The qiime-test script had been working for the past couple weeks and there have
been no major changes to the qiime port lately.
I can still build and run fortran programs using
-Wl,-rpath,/usr/local/lib/gcc49.
This looks to me like a numpy link error, maybe failing to use rpath to load
the correct libgcc?
Thanks,
Jason
FreeBSD unixdev.ceas bacon ~ 403: ./qiime-test qiime-tests/
Traceback (most recent call last):
File "./all_tests.py", line 10, in <module>
from qiime.util import (parse_command_line_parameters, get_options_lookup,
File "/usr/local/lib/python2.7/site-packages/qiime/util.py", line 35, in
<module>
from numpy import (array, zeros, shape, vstack, ndarray, asarray,
File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in
<module>
from . import add_newdocs
File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13,
in <module>
from numpy.lib import add_newdoc
File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8,
in <module>
from .type_check import *
File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line
11, in <module>
import numpy.core.numeric as _nx
File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line
14, in <module>
from . import multiarray
ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by
/usr/local/lib/gcc49/libgfortran.so.3 not found
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