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Maintainer: po...@freebsd.org Last committer: pa...@freebsd.org Ident: $FreeBSD: head/biology/ncbi-toolkit/Makefile 348888 2014-03-23 20:50:54Z pawel $ Log URL: http://beefy2.nyi.freebsd.org/data/93amd64-default/416942/logs/ncbi-toolkit-2012.06.20.log Build URL: http://beefy2.nyi.freebsd.org/build.html?mastername=93amd64-default&build=416942 Log: ====>> Building biology/ncbi-toolkit build started at Thu Jun 16 05:10:26 UTC 2016 port directory: /usr/ports/biology/ncbi-toolkit building for: FreeBSD 93amd64-default-job-05 9.3-RELEASE-p44 FreeBSD 9.3-RELEASE-p44 amd64 maintained by: po...@freebsd.org Makefile ident: $FreeBSD: head/biology/ncbi-toolkit/Makefile 348888 2014-03-23 20:50:54Z pawel $ Poudriere version: 3.1.12 Host OSVERSION: 1100109 Jail OSVERSION: 903000 ---Begin Environment--- SHELL=/bin/csh UNAME_v=FreeBSD 9.3-RELEASE-p44 UNAME_r=9.3-RELEASE-p44 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=amd64 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/93amd64-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=ncbi-toolkit-2012.06.20 OSREL=9.3 _OSRELEASE=9.3-RELEASE-p44 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/93amd64-default/ref/.p/pool HAVE_COMPAT_IA32_KERN=YES LINUX_OSRELEASE=2.6.32 MASTERNAME=93amd64-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=903000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for ncbi-toolkit-2012.06.20: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- MOTIFLIB="-L/usr/local/lib -lXm -lXp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=9.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/ncbi-toolkit" EXAMPLESDIR="share/examples/ncbi-toolkit" DATADIR="share/ncbi-toolkit" WWWDIR="www/ncbi-toolkit" ETCDIR="etc/ncbi-toolkit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-toolkit DOCSDIR=/usr/local/share/doc/ncbi-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-toolkit WWWDIR=/usr/local/www/ncbi-toolkit ETCDIR=/usr/local/etc/ncbi-toolkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =======================<phase: pkg-depends >============================ ===> ncbi-toolkit-2012.06.20 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.5_1.txz [93amd64-default-job-05] Installing pkg-1.8.5_1... [93amd64-default-job-05] Extracting pkg-1.8.5_1: .......... done ===> ncbi-toolkit-2012.06.20 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-toolkit-2012.06.20 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ncbi-toolkit-2012.06.20 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ncbi-toolkit-2012.06.20 for building => SHA256 Checksum OK for ncbi-toolkit-2012.06.20/ncbi.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> NOTICE: The ncbi-toolkit port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by ncbi-toolkit-2012.06.20 for building ===> Extracting for ncbi-toolkit-2012.06.20 => SHA256 Checksum OK for ncbi-toolkit-2012.06.20/ncbi.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for ncbi-toolkit-2012.06.20 ===> Applying FreeBSD patches for ncbi-toolkit-2012.06.20 =========================================================================== =======================<phase: build-depends >============================ ===> ncbi-toolkit-2012.06.20 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found ===> Installing existing package /packages/All/libXpm-3.5.11_4.txz [93amd64-default-job-05] Installing libXpm-3.5.11_4... [93amd64-default-job-05] `-- Installing xproto-7.0.28... [93amd64-default-job-05] `-- Extracting xproto-7.0.28: .......... done [93amd64-default-job-05] `-- Installing libXt-1.1.5,1... [93amd64-default-job-05] | `-- Installing libSM-1.2.2_3,1... [93amd64-default-job-05] | | `-- Installing libICE-1.0.9_1,1... [93amd64-default-job-05] | | `-- Extracting libICE-1.0.9_1,1: .......... done [93amd64-default-job-05] | `-- Extracting libSM-1.2.2_3,1: .......... done [93amd64-default-job-05] | `-- Installing libX11-1.6.3,1... [93amd64-default-job-05] | | `-- Installing kbproto-1.0.7... [93amd64-default-job-05] | | `-- Extracting kbproto-1.0.7: .......... done [93amd64-default-job-05] | | `-- Installing libXdmcp-1.1.2... [93amd64-default-job-05] | | `-- Extracting libXdmcp-1.1.2: ......... done [93amd64-default-job-05] | | `-- Installing libxcb-1.11.1... [93amd64-default-job-05] | | `-- Installing libxml2-2.9.3... <snip> *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../network/wwwblast/Src/*.h ../include ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. *** [copy] Error code 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accutils.c rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c cc -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a cc -o Psequin -I. -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -L/usr/local/lib -lXm -lXp -lXpm -lXmu -lXt -lX11 -lXext -lm -lXft -lpng -ljpeg -liconv sequin1.c: In function 'SQACT_GuessWhatIAm': sequin1.c:4927: warning: comparison is always false due to limited range of data type sequin3.c: In function 'AddBlastTag': sequin3.c:18797: warning: cast from pointer to integer of different size sequin3.c: In function 'CommonAddBlastToSeqAnnot': sequin3.c:18822: warning: cast to pointer from integer of different size sequin9.c: In function 'UpdatePairToUpdateTitlesDialog': sequin9.c:14092: warning: large integer implicitly truncated to unsigned type /usr/bin/ld: cannot find -lpng *** [Psequin] Error code 1 Stop in /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/build. FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 1 ####### # ##### ##### #### ##### # # # # # # # # # ##### # # # # # # # # # ##### ##### # # ##### # # # # # # # # # ####### # # # # #### # # *** [do-build] Error code 1 Stop in /usr/ports/biology/ncbi-toolkit. _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
