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Maintainer: y...@freebsd.org Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/pe0765bd8fdc4_s7d1d9cc440f/logs/deal.II-9.6.1.log Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=pe0765bd8fdc4_s7d1d9cc440f Log: =>> Building math/deal.ii build started at Sun Dec 22 09:29:19 UTC 2024 port directory: /usr/ports/math/deal.ii package name: deal.II-9.6.1 building for: FreeBSD main-i386-default-job-03 15.0-CURRENT FreeBSD 15.0-CURRENT 1500029 i386 maintained by: y...@freebsd.org Makefile datestamp: -rw-r--r-- 1 root wheel 4449 Dec 22 01:01 /usr/ports/math/deal.ii/Makefile Ports top last git commit: e0765bd8fdc Ports top unclean checkout: no Port dir last git commit: 03ea0f3a11d Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500028 Jail OSVERSION: 1500029 Job Id: 03 !!! Jail is newer than host. (Jail: 1500029, Host: 1500028) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 OSVERSION=1500029 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 UNAME_m=i386 UNAME_p=i386 UNAME_r=15.0-CURRENT LOCALBASE=/usr/local UNAME_v=FreeBSD 15.0-CURRENT 1500029 USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-i386-default/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-i386-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for deal.II-9.6.1: ADOLC=off: Compile with ADOL-C ARPACK=off: Compile with Arpack and PArpack (only with MPI, LAPACK) GSL=on: Compile with gsl LAPACK=on: Compile with LAPACK for matrix operations MPI=on: MPI support (math/sundials must be compiled with MPI) OPENCASCADE=on: Compile with OpenCascade PETSC=on: Compile with Petsc (only with MPI) SCALAPACK=on: Compile with ScaLAPACK (only with MPI) SLEPC=on: Compile with Slepc (only with MPI) SUNDIALS=on: Compile with SUNDIALS ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- y...@freebsd.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- BLA_VENDOR="Generic" F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/math/deal.ii/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/deal.ii/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/deal.ii/work/.cache HOME=/wrkdirs/usr/ports/math/deal.ii/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/deal.ii/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/deal.ii/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/math/deal.ii/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/deal.ii/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/deal.ii/work/.cache HOME=/wrkdirs/usr/ports/math/deal.ii/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/deal.ii/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/deal.ii/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lomp -lexecinfo -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/deal.II" EXAMPLESDIR="share/examples/deal.II" DATADIR="share/deal.II" WWWDIR="www/deal.II" ETCDIR="etc/deal.II" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/deal.II DOCSDIR=/usr/local/share/doc/deal.II EXAMPLESDIR=/usr/local/share/examples/deal.II WWWDIR=/usr/local/www/deal.II ETCDIR=/usr/local/etc/deal.II --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> deal.II-9.6.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [main-i386-default-job-03] Installing pkg-1.21.3... [main-i386-default-job-03] Extracting pkg-1.21.3: .......... done ===> deal.II-9.6.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of deal.II-9.6.1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 LGPL21 accepted by the user => dealii-9.6.1.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://github.com/dealii/dealii/releases/download/v9.6.1/dealii-9.6.1.tar.gz dealii-9.6.1.tar.gz 38 MB 106 MBps 00s ===> Fetching all distfiles required by deal.II-9.6.1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 LGPL21 accepted by the user ===> Fetching all distfiles required by deal.II-9.6.1 for building => SHA256 Checksum OK for dealii-9.6.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 LGPL21 accepted by the user ===> Fetching all distfiles required by deal.II-9.6.1 for building ===> Extracting for deal.II-9.6.1 <snip> -- Query git repository information. -- Could NOT find Git (missing: GIT_EXECUTABLE) -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_00_threads.cmake -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Found Threads: TRUE -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_10_lapack.cmake -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/local/lib/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- Found LAPACK: /usr/local/lib/liblapack.so;/usr/local/lib/libblas.so -- Processing LAPACK variables and targets -- Processing LAPACK variables and targets - Done -- Performing Test LAPACK_SYMBOL_CHECK -- Performing Test LAPACK_SYMBOL_CHECK - Success -- Performing Test MKL_SYMBOL_CHECK -- Performing Test MKL_SYMBOL_CHECK - Failed -- Use other than Intel MKL implementation of BLAS/LAPACK (consult CMakeFiles/CMakeError.log for further information). -- -- Defining target: interface_lapack -- LINK_LIBRARIES: /usr/local/lib/liblapack.so;/usr/local/lib/libblas.so -- LINK_OPTIONS: -lomp;-lexecinfo;-L/usr/local/lib;-Wl,-rpath=/usr/local/lib/gcc13;-L/usr/local/lib/gcc13;-fstack-protector-strong;-L/usr/local/lib -- -- DEAL_II_WITH_LAPACK successfully set up with external dependencies. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_10_mpi.cmake -- Found MPI_C: /usr/local/lib/libmpi.so (found version "4.1") -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "4.1") -- Found MPI_Fortran: /usr/local/lib/libmpifort.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") -- Found MPI_MPI_H -- Performing Test MPI_UNDERLINKAGE_OK -- Performing Test MPI_UNDERLINKAGE_OK - Success -- Processing MPI variables and targets -- Processing MPI variables and targets - Done -- -- Defining target: interface_mpi -- VERSION: 4.1 -- LINK_LIBRARIES: /usr/local/lib/libmpicxx.so;/usr/local/lib/libmpifort.so;/usr/local/lib/libmpi.so -- INCLUDE_DIRECTORIES: /usr/local/include;/usr/local/include/json-c;/usr/local/include/gcc13 -- LINK_OPTIONS: -Wl,-rpath=/usr/local/lib/gcc13;SHELL:-Wl,-rpath -Wl,/usr/local/lib;-L/usr/local/lib/gcc13 -- -- DEAL_II_WITH_MPI successfully set up with external dependencies. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_10_taskflow.cmake -- DEAL_II_WITH_TASKFLOW is set to off. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_10_tbb.cmake -- Performing Test DEAL_II_HAVE_FLAG_Wno_parentheses -- Performing Test DEAL_II_HAVE_FLAG_Wno_parentheses - Success -- -- DEAL_II_WITH_TBB successfully set up with bundled packages. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_10_zlib.cmake -- Found ZLIB: /usr/lib/libz.so (found version "1.3.1") -- Processing ZLIB variables and targets -- Processing ZLIB variables and targets - Done -- -- Defining target: interface_zlib -- VERSION: 1.3.1 -- LINK_LIBRARIES: /usr/lib/libz.so -- INCLUDE_DIRECTORIES: /usr/include -- -- DEAL_II_WITH_ZLIB successfully set up with external dependencies. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_20_boost.cmake CMake Warning (dev) at cmake/modules/FindDEAL_II_BOOST.cmake:57 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake/configure/configure_20_boost.cmake:35 (find_package) /wrkdirs/usr/ports/math/deal.ii/work/.build/CMakeFiles/CMakeTmp/evaluate_expression.tmp:1 (feature_BOOST_find_external) cmake/macros/macro_evaluate_expression.cmake:29 (include) cmake/macros/macro_configure_feature.cmake:238 (evaluate_expression) cmake/configure/configure_20_boost.cmake:175 (configure_feature) cmake/macros/macro_verbose_include.cmake:18 (include) CMakeLists.txt:128 (verbose_include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/include (found suitable version "1.86.0", minimum required is "1.59") found components: iostreams serialization system thread regex chrono atomic -- Processing BOOST variables and targets -- Processing BOOST variables and targets - Done -- Performing Test BOOST_IOSTREAMS_USABLE -- Performing Test BOOST_IOSTREAMS_USABLE - Success -- Performing Test DEAL_II_BOOST_HAS_BROKEN_HEADER_DEPRECATIONS_OK -- Performing Test DEAL_II_BOOST_HAS_BROKEN_HEADER_DEPRECATIONS_OK - Failed -- Test unsuccessful, define DEAL_II_BOOST_HAS_BROKEN_HEADER_DEPRECATIONS -- -- Defining target: interface_boost -- VERSION: 1.86.0 -- LINK_LIBRARIES: /usr/local/lib/libboost_iostreams.so;/usr/local/lib/libboost_serialization.so;/usr/local/lib/libboost_system.so;/usr/local/lib/libboost_thread.so;/usr/local/lib/libboost_regex.so;/usr/local/lib/libboost_chrono.so;/usr/local/lib/libboost_atomic.so -- INCLUDE_DIRECTORIES: /usr/local/include -- -- DEAL_II_WITH_BOOST successfully set up with external dependencies. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_20_ginkgo.cmake -- GINKGO_LIBRARY_ginkgo not found! The call was: -- find_library(GINKGO_LIBRARY_ginkgo NAMES ginkgo HINTS NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH) -- Processing GINKGO variables and targets -- GINKGO_LIBRARIES: *** Required variable "GINKGO_LIBRARY_ginkgo" set to NOTFOUND *** -- GINKGO_INCLUDE_DIRS: *** Required variable "GINKGO_INSTALL_INCLUDE_DIR" empty *** -- Unable to process GINKGO -- DEAL_II_WITH_GINKGO has unmet external dependencies. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_20_metis.cmake -- Found METIS_LIBRARY -- Found METIS_INCLUDE_DIR -- Processing METIS variables and targets -- Processing METIS variables and targets - Done -- -- Defining target: interface_metis -- VERSION: 5.1.0 -- LINK_LIBRARIES: /usr/local/lib/libmetis.so;/usr/local/lib/libmpi.so -- INCLUDE_DIRECTORIES: /usr/local/include -- -- DEAL_II_WITH_METIS successfully set up with external dependencies. -- -- Include /wrkdirs/usr/ports/math/deal.ii/work/dealii-9.6.1/cmake/configure/configure_20_petsc.cmake -- Found PETSC_LIBRARY -- Found PETSC_INCLUDE_DIR_ARCH -- Found PETSC_INCLUDE_DIR_COMMON -- Found PETSC_PETSCVARIABLES -- Found PETSC_LIBRARY_lapack -- Found PETSC_LIBRARY_blis -- Performing Test PETSC_LIBRARY_pthread -- Performing Test PETSC_LIBRARY_pthread - Success -- Found PETSC_LIBRARY_metis -- Performing Test PETSC_LIBRARY_m -- Performing Test PETSC_LIBRARY_m - Success -- Found PETSC_LIBRARY_X11 -- Found PETSC_LIBRARY_mpifort -- Found PETSC_LIBRARY_mpi -- Performing Test PETSC_LIBRARY_gfortran -- Performing Test PETSC_LIBRARY_gfortran - Success -- Found PETSC_LIBRARY_ssp_nonshared -- Performing Test PETSC_LIBRARY_quadmath -- Performing Test PETSC_LIBRARY_quadmath - Success -- Found PETSC_LIBRARY_mpicxx -- Found PETSC_LIBRARY_mpi -- Found PETSC_LIBRARY_c++ -- Processing PETSC variables and targets -- Processing PETSC variables and targets - Done -- Could not find a sufficient PETSc installation: PETSc has to be configured to use the same number of bits for the global indices as deal.II. -- DEAL_II_WITH_PETSC has unmet external dependencies. CMake Error at cmake/configure/configure_20_petsc.cmake:147 (message): Could not find the petsc library! Could not find a sufficient PETSc installation: PETSc has to be configured to use the same number of bits for the global indices as deal.II, but found: DEAL_II_WITH_64BIT_INDICES = true PETSC_WITH_64BIT_INDICES = (FALSE) Please ensure that the petsc library version 3.7.0 or newer is installed on your computer and is configured with the same mpi options as deal.II If the library is not at a default location, either provide some hints for the autodetection: PETSc installed with --prefix=<...> to a destination: $ PETSC_DIR="..." cmake <...> $ cmake -DPETSC_DIR="..." <...> PETSc compiled in source tree: $ PETSC_DIR="..." PETSC_ARCH="..." cmake <...> $ cmake -DPETSC_DIR="..." -DPETSC_ARCH="..." <...> or set the relevant variables by hand in ccmake. Call Stack (most recent call first): /wrkdirs/usr/ports/math/deal.ii/work/.build/CMakeFiles/CMakeTmp/evaluate_expression.tmp:1 (feature_PETSC_error_message) cmake/macros/macro_evaluate_expression.cmake:29 (include) cmake/macros/macro_configure_feature.cmake:274 (evaluate_expression) cmake/configure/configure_20_petsc.cmake:166 (configure_feature) cmake/macros/macro_verbose_include.cmake:18 (include) CMakeLists.txt:128 (verbose_include) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped making "configure" in /usr/ports/math/deal.ii
