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Maintainer: thie...@freebsd.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p34de869e4274_se8d027be6b/logs/R-cran-XLConnect-1.0.10.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p34de869e4274_se8d027be6b Log: =>> Building math/R-cran-XLConnect build started at Sun Dec 8 00:09:02 UTC 2024 port directory: /usr/ports/math/R-cran-XLConnect package name: R-cran-XLConnect-1.0.10 building for: FreeBSD main-armv7-default-job-13 15.0-CURRENT FreeBSD 15.0-CURRENT 1500028 arm maintained by: thie...@freebsd.org Makefile datestamp: -rw-r--r-- 1 root wheel 1459 May 4 2024 /usr/ports/math/R-cran-XLConnect/Makefile Ports top last git commit: 34de869e427 Ports top unclean checkout: no Port dir last git commit: c58885465e2 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1500028 Job Id: 13 !!! Jail is newer than host. (Jail: 1500028, Host: 1500023) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500028 UNAME_v=FreeBSD 15.0-CURRENT 1500028 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-armv7-default/13/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- thie...@freebsd.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-XLConnect/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-XLConnect/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" B SD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/XLConnect OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/XLConnect" EXAMPLESDIR="share/examples/XLConnect" DATADIR="share/XLConnect" WWWDIR="www/XLConnect" ETCDIR="etc/XLConnect" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/XLConnect DOCSDIR=/usr/local/share/doc/XLConnect EXAMPLESDIR=/usr/local/share/examples/XLConnect WWWDIR=/usr/local/www/XLConnect ETCDIR=/usr/local/etc/XLConnect --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- ulimit: can't get limit: Invalid argument cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-XLConnect-1.0.10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [main-armv7-default-job-13] Installing pkg-1.21.3... [main-armv7-default-job-13] Extracting pkg-1.21.3: .......... done ===> R-cran-XLConnect-1.0.10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-XLConnect-1.0.10 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-XLConnect-1.0.10 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-XLConnect-1.0.10 for building => SHA256 Checksum OK for XLConnect_1.0.10.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-XLConnect-1.0.10 for building ===> Extracting for R-cran-XLConnect-1.0.10 => SHA256 Checksum OK for XLConnect_1.0.10.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for R-cran-XLConnect-1.0.10 ===> Applying FreeBSD patches for R-cran-XLConnect-1.0.10 from /usr/ports/math/R-cran-XLConnect/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-XLConnect-1.0.10 depends on package: R-cran-rJava>0 - not found ===> Installing existing package /packages/All/R-cran-rJava-1.0.11.pkg [main-armv7-default-job-13] Installing R-cran-rJava-1.0.11... [main-armv7-default-job-13] `-- Installing R-4.4.2... [main-armv7-default-job-13] | `-- Installing cairo-1.17.4_2,3... [main-armv7-default-job-13] | | `-- Installing fontconfig-2.15.0_3,1... [main-armv7-default-job-13] | | `-- Installing expat-2.6.3... [main-armv7-default-job-13] | | `-- Extracting expat-2.6.3: .......... done <snip> FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from python311-3.11.10: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===== Message from gcc13-13.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from ghostscript10-10.04.0: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from libinotify-20240724: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from openjdk8-8.432.06.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> R-cran-XLConnect-1.0.10 depends on package: R-cran-rJava>0 - found ===> Returning to build of R-cran-XLConnect-1.0.10 ===> R-cran-XLConnect-1.0.10 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-XLConnect-1.0.10 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for R-cran-XLConnect-1.0.10 =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =======================<phase: run-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-XLConnect-1.0.10 depends on package: R-cran-rJava>0 - found ===> R-cran-XLConnect-1.0.10 depends on package: apache-poi>0 - not found ===> Installing existing package /packages/All/apache-poi-5.2.5.pkg [main-armv7-default-job-13] Installing apache-poi-5.2.5... [main-armv7-default-job-13] `-- Installing SparseBitSet-1.3... [main-armv7-default-job-13] `-- Extracting SparseBitSet-1.3: .... done [main-armv7-default-job-13] `-- Installing apache-commons-codec-1.16.0... [main-armv7-default-job-13] `-- Extracting apache-commons-codec-1.16.0: .......... done [main-armv7-default-job-13] `-- Installing apache-commons-collections4-4.5.0.m2... [main-armv7-default-job-13] `-- Extracting apache-commons-collections4-4.5.0.m2: .......... done [main-armv7-default-job-13] `-- Installing apache-commons-io-2.16.1... [main-armv7-default-job-13] `-- Extracting apache-commons-io-2.16.1: .......... done [main-armv7-default-job-13] `-- Installing apache-commons-math-3.6.1_2... [main-armv7-default-job-13] `-- Extracting apache-commons-math-3.6.1_2: ........ done [main-armv7-default-job-13] `-- Installing apache-log4j2-2.23.1... [main-armv7-default-job-13] `-- Extracting apache-log4j2-2.23.1: .......... done [main-armv7-default-job-13] Extracting apache-poi-5.2.5: .......... done ===== Message from apache-commons-io-2.16.1: -- ===> NOTICE: The apache-commons-io port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from apache-poi-5.2.5: -- ===> NOTICE: The apache-poi port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> R-cran-XLConnect-1.0.10 depends on package: apache-poi>0 - found ===> Returning to build of R-cran-XLConnect-1.0.10 ===> R-cran-XLConnect-1.0.10 depends on package: SparseBitSet>0 - found ===> R-cran-XLConnect-1.0.10 depends on package: apache-xmlbeans>0 - not found ===> Installing existing package /packages/All/apache-xmlbeans-5.1.1_1.pkg [main-armv7-default-job-13] Installing apache-xmlbeans-5.1.1_1... [main-armv7-default-job-13] `-- Installing saxon-he-10.6... [main-armv7-default-job-13] `-- Extracting saxon-he-10.6: ...... done [main-armv7-default-job-13] Extracting apache-xmlbeans-5.1.1_1: .......... done ===== Message from apache-xmlbeans-5.1.1_1: -- To use XMLBeans you might have to define the following variables: export XMLBEANS_HOME=/usr/local/share/java/classes export CLASSPATH=/usr/local/share/java/classes/xmlbeans.jar:$CLASSPATH ===> R-cran-XLConnect-1.0.10 depends on package: apache-xmlbeans>0 - found ===> Returning to build of R-cran-XLConnect-1.0.10 ===> R-cran-XLConnect-1.0.10 depends on package: apache-commons-io>0 - found ===> R-cran-XLConnect-1.0.10 depends on package: apache-commons-math>0 - found ===> R-cran-XLConnect-1.0.10 depends on package: apache-commons-codec>0 - found ===> R-cran-XLConnect-1.0.10 depends on package: apache-commons-compress>0 - not found ===> Installing existing package /packages/All/apache-commons-compress-1.26.2.pkg [main-armv7-default-job-13] Installing apache-commons-compress-1.26.2... [main-armv7-default-job-13] Extracting apache-commons-compress-1.26.2: .......... done ===> R-cran-XLConnect-1.0.10 depends on package: apache-commons-compress>0 - found ===> Returning to build of R-cran-XLConnect-1.0.10 ===> R-cran-XLConnect-1.0.10 depends on package: apache-commons-collections4>0 - found ===> R-cran-XLConnect-1.0.10 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-XLConnect-1.0.10 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: stage >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for R-cran-XLConnect-1.0.10 ===> Generating temporary packing list * installing *source* package 'XLConnect' ... file 'R/onLoad.R' has the wrong MD5 checksum ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path Warning in file(con, "rb") : cannot open file '/tmp/RtmpbS7ypk/file772c27f56e44': No such file or directory Error in file(con, "rb") : cannot open the connection * removing '/wrkdirs/usr/ports/math/R-cran-XLConnect/work/stage/usr/local/lib/R/library/XLConnect' *** Error code 1 Stop. make: stopped making "stage" in /usr/ports/math/R-cran-XLConnect
