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Maintainer: y...@freebsd.org Log URL: http://package19.nyi.freebsd.org/data/122amd64-default-build-as-user/0029b0875f4d/logs/py38-nilearn-0.8.1.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=122amd64-default-build-as-user&build=0029b0875f4d Log: =>> Building science/py-nilearn build started at Mon Feb 14 04:15:04 UTC 2022 port directory: /usr/ports/science/py-nilearn package name: py38-nilearn-0.8.1 building for: FreeBSD 122amd64-default-build-as-user-job-05 12.2-RELEASE-p13 FreeBSD 12.2-RELEASE-p13 amd64 maintained by: y...@freebsd.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400050 Jail OSVERSION: 1202000 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1202000 UNAME_v=FreeBSD 12.2-RELEASE-p13 UNAME_r=12.2-RELEASE-p13 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/poudriere/data/.m/122amd64-default-build-as-user/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 UID=0 PWD=/poudriere/data/.m/122amd64-default-build-as-user/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=122amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/122amd64-default-build-as-user/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py38 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py38 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- y...@freebsd.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38/.cache HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-nilearn/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38/.cache HOME=/wrkdirs/usr/ports/science/py-nilearn/work-py38 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-nilearn/work-py38/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="in stall -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.8 PYTHON_LIBDIR=lib/python3.8 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.8/site-packages PYTHON_SUFFIX=38 PYTHON_EXT_SUFFIX=.cpython-38 PYTHON_VER=3.8 PYTHON_VERSION=python3.8 PYTHON2="@comment " PYTHON3="" OSREL=12.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/nilearn" EXAMPLESDIR="share/examples/nilearn" DATADIR="share/nilearn" WWWDIR="www/nilearn" ETCDIR="etc/nilearn" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nilearn DOCSDIR=/usr/local/share/doc/nilearn EXAMPLESDIR=/usr/local/share/examples/nilearn WWWDIR=/usr/local/www/nilearn ETCDIR=/usr/local/etc/nilearn --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (g...@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (g...@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (g...@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.2-RELEASE-p13 OSREL=12.2 OSVERSION=1202000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py38-nilearn-0.8.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.5_1.pkg [122amd64-default-build-as-user-job-05] Installing pkg-1.17.5_1... [122amd64-default-build-as-user-job-05] Extracting pkg-1.17.5_1: .......... done ===> py38-nilearn-0.8.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py38-nilearn-0.8.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py38-nilearn-0.8.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py38-nilearn-0.8.1 for building => SHA256 Checksum OK for nilearn-0.8.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py38-nilearn-0.8.1 for building ===> Extracting for py38-nilearn-0.8.1 => SHA256 Checksum OK for nilearn-0.8.1.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py38-nilearn-0.8.1 =========================================================================== =======================<phase: build-depends >============================ ===> py38-nilearn-0.8.1 depends on package: py38-setuptools>0 - not found ===> Installing existing package /packages/All/py38-setuptools-57.0.0.pkg [122amd64-default-build-as-user-job-05] Installing py38-setuptools-57.0.0... [122amd64-default-build-as-user-job-05] `-- Installing python38-3.8.12_1... [122amd64-default-build-as-user-job-05] | `-- Installing gettext-runtime-0.21... [122amd64-default-build-as-user-job-05] | | `-- Installing indexinfo-0.3.1... [122amd64-default-build-as-user-job-05] | | `-- Extracting indexinfo-0.3.1: .... done [122amd64-default-build-as-user-job-05] | `-- Extracting gettext-runtime-0.21: .......... done [122amd64-default-build-as-user-job-05] | `-- Installing libffi-3.3_1... [122amd64-default-build-as-user-job-05] | `-- Extracting libffi-3.3_1: .......... done [122amd64-default-build-as-user-job-05] | `-- Installing mpdecimal-2.5.1... [122amd64-default-build-as-user-job-05] | `-- Extracting mpdecimal-2.5.1: .......... done [122amd64-default-build-as-user-job-05] | `-- Installing readline-8.1.1... 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[122amd64-default-build-as-user-job-05] | | | `-- Extracting libXrender-0.9.10_2: .......... done [122amd64-default-build-as-user-job-05] | | `-- Extracting libXft-2.3.4: .......... done [122amd64-default-build-as-user-job-05] | | `-- Extracting tk86-8.6.12: .......... done [122amd64-default-build-as-user-job-05] | `-- Extracting py38-tkinter-3.8.12_6: ........ done [122amd64-default-build-as-user-job-05] | `-- Installing webp-1.2.2... [122amd64-default-build-as-user-job-05] | | `-- Installing giflib-5.2.1... [122amd64-default-build-as-user-job-05] | | `-- Extracting giflib-5.2.1: .......... done [122amd64-default-build-as-user-job-05] | `-- Extracting webp-1.2.2: .......... done [122amd64-default-build-as-user-job-05] `-- Extracting py38-pillow-8.2.0_1: .......... done [122amd64-default-build-as-user-job-05] `-- Installing py38-pluggy-0.13.1... [122amd64-default-build-as-user-job-05] `-- Extracting py38-pluggy-0.13.1: .......... done [122amd64-default-build-as-user-job-05] `-- Installing py38-pyparsing-3.0.7... [122amd64-default-build-as-user-job-05] `-- Extracting py38-pyparsing-3.0.7: .......... done [122amd64-default-build-as-user-job-05] `-- Installing py38-pytz-2021.3,1... [122amd64-default-build-as-user-job-05] `-- Extracting py38-pytz-2021.3,1: .......... done [122amd64-default-build-as-user-job-05] `-- Installing py38-tornado-6.1... [122amd64-default-build-as-user-job-05] `-- Extracting py38-tornado-6.1: .......... done [122amd64-default-build-as-user-job-05] `-- Installing qhull-7.3.2_2,1... [122amd64-default-build-as-user-job-05] `-- Extracting qhull-7.3.2_2,1: .......... done [122amd64-default-build-as-user-job-05] Extracting py38-matplotlib-3.4.3: .......... done ===== Message from freetype2-2.11.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> py38-nilearn-0.8.1 depends on package: py38-matplotlib>0 - found ===> Returning to build of py38-nilearn-0.8.1 ===> py38-nilearn-0.8.1 depends on package: py38-nibabel>0 - not found ===> Installing existing package /packages/All/py38-nibabel-3.2.1.pkg [122amd64-default-build-as-user-job-05] Installing py38-nibabel-3.2.1... [122amd64-default-build-as-user-job-05] `-- Installing py38-packaging-21.3... [122amd64-default-build-as-user-job-05] `-- Extracting py38-packaging-21.3: .......... done [122amd64-default-build-as-user-job-05] Extracting py38-nibabel-3.2.1: .......... done ===> py38-nilearn-0.8.1 depends on package: py38-nibabel>0 - found ===> Returning to build of py38-nilearn-0.8.1 ===> py38-nilearn-0.8.1 depends on package: py38-pandas>0 - not found ===> Installing existing package /packages/All/py38-pandas-1.2.5,1.pkg [122amd64-default-build-as-user-job-05] Installing py38-pandas-1.2.5,1... [122amd64-default-build-as-user-job-05] `-- Installing py38-bottleneck-1.3.2... [122amd64-default-build-as-user-job-05] `-- Extracting py38-bottleneck-1.3.2: .......... done [122amd64-default-build-as-user-job-05] `-- Installing py38-cython-0.29.26... [122amd64-default-build-as-user-job-05] `-- Extracting py38-cython-0.29.26: .......... done [122amd64-default-build-as-user-job-05] `-- Installing py38-numexpr-2.8.1... [122amd64-default-build-as-user-job-05] `-- Extracting py38-numexpr-2.8.1: .......... done [122amd64-default-build-as-user-job-05] `-- Installing py38-sqlite3-3.8.12_7... [122amd64-default-build-as-user-job-05] | `-- Installing sqlite3-3.37.2,1... [122amd64-default-build-as-user-job-05] | | `-- Installing libedit-3.1.20210216,1... [122amd64-default-build-as-user-job-05] | | `-- Extracting libedit-3.1.20210216,1: .......... done [122amd64-default-build-as-user-job-05] | `-- Extracting sqlite3-3.37.2,1: .......... done [122amd64-default-build-as-user-job-05] `-- Extracting py38-sqlite3-3.8.12_7: ........ done [122amd64-default-build-as-user-job-05] Extracting py38-pandas-1.2.5,1: .......... done ===== Message from py38-pandas-1.2.5,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===> py38-nilearn-0.8.1 depends on package: py38-pandas>0 - found ===> Returning to build of py38-nilearn-0.8.1 ===> py38-nilearn-0.8.1 depends on package: py38-scikit-learn>0 - not found ===> Installing existing package /packages/All/py38-scikit-learn-1.0.2.pkg [122amd64-default-build-as-user-job-05] Installing py38-scikit-learn-1.0.2... [122amd64-default-build-as-user-job-05] `-- Installing py38-scipy-1.7.1... [122amd64-default-build-as-user-job-05] | `-- Installing blas-3.10.0... [122amd64-default-build-as-user-job-05] | `-- Extracting blas-3.10.0: ........ done [122amd64-default-build-as-user-job-05] `-- Extracting py38-scipy-1.7.1: .......... done [122amd64-default-build-as-user-job-05] Extracting py38-scikit-learn-1.0.2: .......... done ===> py38-nilearn-0.8.1 depends on package: py38-scikit-learn>0 - found ===> Returning to build of py38-nilearn-0.8.1 ===> py38-nilearn-0.8.1 depends on package: py38-scipy>0 - found ===> py38-nilearn-0.8.1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.1.16.pkg [122amd64-default-build-as-user-job-05] Installing bash-5.1.16... [122amd64-default-build-as-user-job-05] Extracting bash-5.1.16: .......... done ===> py38-nilearn-0.8.1 depends on executable: bash - found ===> Returning to build of py38-nilearn-0.8.1 ===> py38-nilearn-0.8.1 depends on package: py38-setuptools>0 - found ===> py38-nilearn-0.8.1 depends on file: /usr/local/bin/python3.8 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for py38-nilearn-0.8.1 ===> Generating temporary packing list Traceback (most recent call last): File "<string>", line 1, in <module> File "setup.py", line 65, in <module> module_check_fn(is_nilearn_installing=True) File "<string>", line 124, in _check_module_dependencies File "<string>", line 73, in _import_module_with_version_check File "/usr/local/lib/python3.8/site-packages/sklearn/__init__.py", line 82, in <module> from .base import clone File "/usr/local/lib/python3.8/site-packages/sklearn/base.py", line 17, in <module> from .utils import _IS_32BIT File "/usr/local/lib/python3.8/site-packages/sklearn/utils/__init__.py", line 28, in <module> from .fixes import np_version, parse_version File "/usr/local/lib/python3.8/site-packages/sklearn/utils/fixes.py", line 22, in <module> import threadpoolctl ModuleNotFoundError: No module named 'threadpoolctl'. Module "sklearn" could not be found. See http://nilearn.github.io/introduction.html#installation for installation information. *** Error code 1 Stop. make: stopped in /usr/ports/science/py-nilearn
