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Maintainer: j...@freebsd.org Last committer: j...@freebsd.org Ident: $FreeBSD: branches/2020Q2/biology/canu/Makefile 528792 2020-03-20 18:14:23Z jwb $ Log URL: http://pylon.nyi.freebsd.org/data/121powerpc64-quarterly/535194/logs/canu-2.0.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=121powerpc64-quarterly&build=535194 Log: =>> Building biology/canu build started at Mon May 18 02:39:20 UTC 2020 port directory: /usr/ports/biology/canu package name: canu-2.0 building for: FreeBSD 121powerpc64-quarterly-job-12 12.1-RELEASE-p5 FreeBSD 12.1-RELEASE-p5 1201000 powerpc maintained by: j...@freebsd.org Makefile ident: $FreeBSD: branches/2020Q2/biology/canu/Makefile 528792 2020-03-20 18:14:23Z jwb $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300084 Jail OSVERSION: 1201000 Job Id: 12 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1201000 UNAME_v=FreeBSD 12.1-RELEASE-p5 1201000 UNAME_r=12.1-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=121powerpc64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- j...@freebsd.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- DESTDIR=/wrkdirs/usr/ports/biology/canu/work/canu-2.0/src CANU_BUILD_ENV=ports PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc9" CFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -fno-strict-aliasing " CPP="cpp9" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 " LIBS="" CXX="g++9" CXXFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.30.2 PERL_VER=5.30 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/canu" EXAMPLESDIR="share/examples/canu" DATADIR="share/canu" WWWDIR="www/canu" ETCDIR="etc/canu" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.8+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/canu DOCSDIR=/usr/local/share/doc/canu EXAMPLESDIR=/usr/local/share/examples/canu WWWDIR=/usr/local/www/canu ETCDIR=/usr/local/etc/canu --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 PPC_ABI=ELFv1 OPSYS=FreeBSD _OSRELEASE=12.1-RELEASE-p5 OSREL=12.1 OSVERSION=1201000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> canu-2.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.13.2.txz [121powerpc64-quarterly-job-12] Installing pkg-1.13.2... [121powerpc64-quarterly-job-12] Extracting pkg-1.13.2: .......... done ===> canu-2.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of canu-2.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-2.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-2.0 for building => SHA256 Checksum OK for marbl-canu-v2.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-2.0 for building ===> Extracting for canu-2.0 => SHA256 Checksum OK for marbl-canu-v2.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for canu-2.0 ===> Applying FreeBSD patches for canu-2.0 =========================================================================== =======================<phase: build-depends >============================ ===> canu-2.0 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [121powerpc64-quarterly-job-12] Installing gmake-4.2.1_3... [121powerpc64-quarterly-job-12] `-- Installing gettext-runtime-0.20.1... [121powerpc64-quarterly-job-12] | `-- Installing indexinfo-0.3.1... [121powerpc64-quarterly-job-12] | `-- Extracting indexinfo-0.3.1: .... done [121powerpc64-quarterly-job-12] `-- Extracting gettext-runtime-0.20.1: .......... done [121powerpc64-quarterly-job-12] Extracting gmake-4.2.1_3: .......... done ===> canu-2.0 depends on executable: gmake - found ===> Returning to build of canu-2.0 ===> canu-2.0 depends on executable: gcc9 - not found ===> Installing existing package /packages/All/gcc9-9.3.0.txz [121powerpc64-quarterly-job-12] Installing gcc9-9.3.0... [121powerpc64-quarterly-job-12] `-- Installing binutils-2.33.1_2,1... [121powerpc64-quarterly-job-12] `-- Extracting binutils-2.33.1_2,1: .......... done [121powerpc64-quarterly-job-12] `-- Installing gcc8-8.4.0... [121powerpc64-quarterly-job-12] | `-- Installing gmp-6.2.0... [121powerpc64-quarterly-job-12] | `-- Extracting gmp-6.2.0: .......... done [121powerpc64-quarterly-job-12] | `-- Installing mpc-1.1.0_2... [121powerpc64-quarterly-job-12] | | `-- Installing mpfr-4.0.2... <snip> | ; utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:252:52: error: expected ')' before 'const' 252 | virtual void * get_deleter( detail::sp_typeinfo const & ti ) | ~ ^~~~~~ | ) In file included from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28, from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:395:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 395 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) ) | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.C:71: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28, from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:518:12: error: expected ';' at end of member declaration 518 | void * get_deleter( sp_typeinfo const & ti ) const | ^~~~~~~~~~~ | ; utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:518:36: error: expected ')' before 'const' 518 | void * get_deleter( sp_typeinfo const & ti ) const | ~ ^~~~~~ | ) In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:242:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 242 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.C:71: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:441:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 441 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn() | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.C:71: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:454:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 454 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn() | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.C:71: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:520:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 520 | shared_ptr & operator=( std::auto_ptr<Y> & r ) | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.C:71: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:529:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 529 | shared_ptr & operator=( std::auto_ptr<Y> && r ) | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.C:71: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:695:12: error: expected ';' at end of member declaration 695 | void * _internal_get_deleter( boost::detail::sp_typeinfo const & ti ) const BOOST_NOEXCEPT | ^~~~~~~~~~~~~~~~~~~~~ | ; utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:695:61: error: expected ')' before 'const' 695 | void * _internal_get_deleter( boost::detail::sp_typeinfo const & ti ) const BOOST_NOEXCEPT | ~ ^~~~~~ | ) In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)': utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:531:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 531 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this ); | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.C:71: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.C:71: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: In function 'D* boost::detail::basic_get_deleter(const boost::shared_ptr<U>&)': utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887:71: error: expected primary-expression before ')' token 887 | return static_cast<D *>( p._internal_get_deleter(BOOST_SP_TYPEID(D)) ); | ^ utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887:54: error: there are no arguments to 'BOOST_SP_TYPEID' that depend on a template parameter, so a declaration of 'BOOST_SP_TYPEID' must be available [-fpermissive] 887 | return static_cast<D *>( p._internal_get_deleter(BOOST_SP_TYPEID(D)) ); | ^~~~~~~~~~~~~~~ utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887:54: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated) stores/ovStoreBuild.C: In function 'int main(int, char**)': stores/ovStoreBuild.C:125:19: warning: ISO C++ forbids converting a string constant to 'std::vector<char*>::value_type' {aka 'char*'} [-Wwrite-strings] 125 | err.push_back("ERROR: No overlap store (-O) supplied.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/ovStoreBuild.C:128:19: warning: ISO C++ forbids converting a string constant to 'std::vector<char*>::value_type' {aka 'char*'} [-Wwrite-strings] 128 | err.push_back("ERROR: No sequence store (-S) supplied.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++9 -o /wrkdirs/usr/ports/biology/canu/work/canu-2.0/src/usr/local/FreeBSD-powerpc64/obj/bin/ovStoreConfig/stores/ovStoreConfig.o -c -MD -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 -pthread -fopenmp -fPIC -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-2.0/src -Iutility stores/ovStoreConfig.C stores/ovStoreConfig.C: In function 'int main(int, char**)': stores/ovStoreConfig.C:372:19: warning: ISO C++ forbids converting a string constant to 'std::vector<char*>::value_type' {aka 'char*'} [-Wwrite-strings] 372 | err.push_back("ERROR: No sequence store (-S) supplied.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/ovStoreConfig.C:375:19: warning: ISO C++ forbids converting a string constant to 'std::vector<char*>::value_type' {aka 'char*'} [-Wwrite-strings] 375 | err.push_back("ERROR: No input overlap files (-L or last on the command line) supplied.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/ovStoreConfig.C:378:19: warning: ISO C++ forbids converting a string constant to 'std::vector<char*>::value_type' {aka 'char*'} [-Wwrite-strings] 378 | err.push_back("ERROR: Can't both -create -describe a config.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/ovStoreConfig.C:381:19: warning: ISO C++ forbids converting a string constant to 'std::vector<char*>::value_type' {aka 'char*'} [-Wwrite-strings] 381 | err.push_back("ERROR: Must supply one of -create or -describe.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/ovStoreConfig.C:385:19: warning: ISO C++ forbids converting a string constant to 'std::vector<char*>::value_type' {aka 'char*'} [-Wwrite-strings] 385 | err.push_back("ERROR: Memory (-M) must be at least 0.25 GB to account for overhead.\n"); // , OVSTORE_MEMORY_OVERHEAD / 1024.0 / 1024.0 / 1024.0 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[1]: *** [Makefile:716: /wrkdirs/usr/ports/biology/canu/work/canu-2.0/src/usr/local/FreeBSD-powerpc64/obj/lib/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.o] Error 1 gmake[1]: *** Waiting for unfinished jobs.... gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/canu/work/canu-2.0/src' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/canu _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
