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Maintainer: y...@freebsd.org Last committer: y...@freebsd.org Ident: $FreeBSD: head/science/gromacs/Makefile 527766 2020-03-04 15:53:04Z yuri $ Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p527914_s356047/logs/gromacs-2020.1.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p527914_s356047 Log: =>> Building science/gromacs build started at Mon Mar 9 04:43:07 UTC 2020 port directory: /usr/ports/science/gromacs package name: gromacs-2020.1 building for: FreeBSD head-powerpc64-default-job-05 13.0-CURRENT FreeBSD 13.0-CURRENT 1300068 powerpc maintained by: y...@freebsd.org Makefile ident: $FreeBSD: head/science/gromacs/Makefile 527766 2020-03-04 15:53:04Z yuri $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300047 Jail OSVERSION: 1300068 Job Id: 05 !!! Jail is newer than host. (Jail: 1300068, Host: 1300047) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300068 UNAME_v=FreeBSD 13.0-CURRENT 1300068 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-2020.1: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=on: Use single instead of double precision OPENCL=off: Heterogeneous computing via OpenCL OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations X11=on: X11 (graphics) support ====> Multiprocessing: you have to select exactly one of them NOMP=off: No multiprocessing support MPICH=off: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- y...@freebsd.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="clang90" CFLAGS="-O2 -pipe -fs tack-protector-strong -fno-strict-aliasing " CPP="clang-cpp90" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="clang++90" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " SUFFIX_D="" MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " SUFFIX_MPI="" X11="" NO_X11="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.30.1 PERL_VER=5.30 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " X11="" NO_X11="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=4 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 PPC_ABI=ELFv1 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300068 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> gromacs-2020.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.13.2.txz [head-powerpc64-default-job-05] Installing pkg-1.13.2... [head-powerpc64-default-job-05] Extracting pkg-1.13.2: .......... done ===> gromacs-2020.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gromacs-2020.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL21 accepted by the user => gromacs-2020.1.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch ftp://ftp.gromacs.org/pub/gromacs/gromacs-2020.1.tar.gz gromacs-2020.1.tar.gz 27 MB 8567 kBps 03s ===> Fetching all distfiles required by gromacs-2020.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2020.1 for building => SHA256 Checksum OK for gromacs-2020.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2020.1 for building ===> Extracting for gromacs-2020.1 => SHA256 Checksum OK for gromacs-2020.1.tar.gz. =========================================================================== <snip> the second will work as long as perl is in PATH. ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> gromacs-2020.1 depends on executable: clang90 - found ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on package: fftw3>0 - not found ===> Installing existing package /packages/All/fftw3-3.3.8_5.txz [head-powerpc64-default-job-05] Installing fftw3-3.3.8_5... [head-powerpc64-default-job-05] Extracting fftw3-3.3.8_5: .......... done ===> gromacs-2020.1 depends on package: fftw3>0 - found ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.16.4.txz [head-powerpc64-default-job-05] Installing cmake-3.16.4... [head-powerpc64-default-job-05] `-- Installing curl-7.68.0... [head-powerpc64-default-job-05] | `-- Installing ca_root_nss-3.51... [head-powerpc64-default-job-05] | `-- Extracting ca_root_nss-3.51: ........ done [head-powerpc64-default-job-05] | `-- Installing libnghttp2-1.40.0... [head-powerpc64-default-job-05] | `-- Extracting libnghttp2-1.40.0: .......... done [head-powerpc64-default-job-05] `-- Extracting curl-7.68.0: .......... done [head-powerpc64-default-job-05] `-- Installing expat-2.2.8... [head-powerpc64-default-job-05] `-- Extracting expat-2.2.8: .......... done [head-powerpc64-default-job-05] `-- Installing jsoncpp-1.9.2... [head-powerpc64-default-job-05] `-- Extracting jsoncpp-1.9.2: .......... done [head-powerpc64-default-job-05] `-- Installing libarchive-3.4.2,1... [head-powerpc64-default-job-05] | `-- Installing liblz4-1.9.2_1,1... [head-powerpc64-default-job-05] | `-- Extracting liblz4-1.9.2_1,1: .......... done [head-powerpc64-default-job-05] | `-- Installing lzo2-2.10_1... [head-powerpc64-default-job-05] | `-- Extracting lzo2-2.10_1: .......... done [head-powerpc64-default-job-05] `-- Extracting libarchive-3.4.2,1: .......... done [head-powerpc64-default-job-05] `-- Installing libuv-1.34.2... [head-powerpc64-default-job-05] `-- Extracting libuv-1.34.2: .......... done [head-powerpc64-default-job-05] `-- Installing rhash-1.3.5... [head-powerpc64-default-job-05] `-- Extracting rhash-1.3.5: .......... done [head-powerpc64-default-job-05] Extracting cmake-3.16.4: .......... done ===== Message from ca_root_nss-3.51: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> gromacs-2020.1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on executable: gfortran9 - found ===> gromacs-2020.1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.3,1.txz [head-powerpc64-default-job-05] Installing pkgconf-1.6.3,1... [head-powerpc64-default-job-05] Extracting pkgconf-1.6.3,1: .......... done ===> gromacs-2020.1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on file: /usr/local/bin/as - found ===> gromacs-2020.1 depends on package: perl5>=5.30.r1<5.31 - found ===> gromacs-2020.1 depends on file: /usr/local/libdata/pkgconfig/ice.pc - not found ===> Installing existing package /packages/All/libICE-1.0.10,1.txz [head-powerpc64-default-job-05] Installing libICE-1.0.10,1... [head-powerpc64-default-job-05] Extracting libICE-1.0.10,1: .......... done ===> gromacs-2020.1 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on file: /usr/local/libdata/pkgconfig/sm.pc - not found ===> Installing existing package /packages/All/libSM-1.2.3,1.txz [head-powerpc64-default-job-05] Installing libSM-1.2.3,1... [head-powerpc64-default-job-05] Extracting libSM-1.2.3,1: .......... done ===> gromacs-2020.1 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Installing existing package /packages/All/libXext-1.3.4,1.txz [head-powerpc64-default-job-05] Installing libXext-1.3.4,1... [head-powerpc64-default-job-05] `-- Installing libX11-1.6.9,1... [head-powerpc64-default-job-05] | `-- Installing libXau-1.0.9... [head-powerpc64-default-job-05] | `-- Extracting libXau-1.0.9: .......... done [head-powerpc64-default-job-05] | `-- Installing libXdmcp-1.1.3... [head-powerpc64-default-job-05] | | `-- Installing xorgproto-2019.2... [head-powerpc64-default-job-05] | | `-- Extracting xorgproto-2019.2: .......... done [head-powerpc64-default-job-05] | `-- Extracting libXdmcp-1.1.3: ......... done [head-powerpc64-default-job-05] | `-- Installing libxcb-1.13.1... [head-powerpc64-default-job-05] | | `-- Installing libpthread-stubs-0.4... [head-powerpc64-default-job-05] | | `-- Extracting libpthread-stubs-0.4: .... done [head-powerpc64-default-job-05] | `-- Extracting libxcb-1.13.1: .......... done [head-powerpc64-default-job-05] `-- Extracting libX11-1.6.9,1: .......... done [head-powerpc64-default-job-05] Extracting libXext-1.3.4,1: .......... done ===> gromacs-2020.1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found =========================================================================== =======================<phase: lib-depends >============================ ===> gromacs-2020.1 depends on shared library: libhwloc.so - not found ===> Installing existing package /packages/All/hwloc-1.11.11.txz [head-powerpc64-default-job-05] Installing hwloc-1.11.11... [head-powerpc64-default-job-05] `-- Installing libpciaccess-0.16... [head-powerpc64-default-job-05] | `-- Installing pciids-20200222... [head-powerpc64-default-job-05] | `-- Extracting pciids-20200222: ..... done [head-powerpc64-default-job-05] `-- Extracting libpciaccess-0.16: ......... done [head-powerpc64-default-job-05] Extracting hwloc-1.11.11: .......... done ===> gromacs-2020.1 depends on shared library: libhwloc.so - found (/usr/local/lib/libhwloc.so) ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on shared library: libfftw3f.so - not found ===> Installing existing package /packages/All/fftw3-float-3.3.8_5.txz [head-powerpc64-default-job-05] Installing fftw3-float-3.3.8_5... [head-powerpc64-default-job-05] Extracting fftw3-float-3.3.8_5: .......... done ===> gromacs-2020.1 depends on shared library: libfftw3f.so - found (/usr/local/lib/libfftw3f.so) ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on shared library: libomp.so - found (/usr/local/llvm90/lib/libomp.so) ===> gromacs-2020.1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> gromacs-2020.1 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.5.0_6.txz [head-powerpc64-default-job-05] Installing blas-3.5.0_6... [head-powerpc64-default-job-05] Extracting blas-3.5.0_6: ....... done ===> gromacs-2020.1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of gromacs-2020.1 ===> gromacs-2020.1 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.5.0_8.txz [head-powerpc64-default-job-05] Installing lapack-3.5.0_8... [head-powerpc64-default-job-05] Extracting lapack-3.5.0_8: .......... done ===> gromacs-2020.1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of gromacs-2020.1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for gromacs-2020.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/gromacs/work/.build -- The C compiler identification is Clang 9.0.1 -- The CXX compiler identification is Clang 9.0.1 -- Check for working C compiler: /usr/local/bin/clang90 -- Check for working C compiler: /usr/local/bin/clang90 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/local/bin/clang++90 -- Check for working CXX compiler: /usr/local/bin/clang++90 -- broken CMake Error at /usr/local/share/cmake/Modules/CMakeTestCXXCompiler.cmake:53 (message): The C++ compiler "/usr/local/bin/clang++90" is not able to compile a simple test program. It fails with the following output: Change Dir: /wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_84605/fast && /usr/bin/make -f CMakeFiles/cmTC_84605.dir/build.make CMakeFiles/cmTC_84605.dir/build Building CXX object CMakeFiles/cmTC_84605.dir/testCXXCompiler.cxx.o /usr/local/bin/clang++90 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -o CMakeFiles/cmTC_84605.dir/testCXXCompiler.cxx.o -c /wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeTmp/testCXXCompiler.cxx Linking CXX executable cmTC_84605 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_84605.dir/link.txt --verbose=1 /usr/local/bin/clang++90 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong CMakeFiles/cmTC_84605.dir/testCXXCompiler.cxx.o -o cmTC_84605 /usr/local/bin/ld: cannot find -lc++ clang-9: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeTmp *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeTmp CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:57 (project) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/gromacs/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/gromacs _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
