Followup for the sake of search engines: none of this has nothing to do
with ffmpeg, nor with the -r setting, nor with the size of the picture,
nor with the amount of light in the room.
Kernel 3.2 (wheezy) - everything is fine, video smooth as silk
Kernel 3.16 (jessie) - the observed "stutter" is present
Time for bisecting... FML
Many thanks to Georgi and Carl for their help affirming I haven't lost
my sanity ;)
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