The jitter really leads to two calculations (together with the step
driver timings you enter):
 * the maximum step rate (bigger jitter -> lower step rate)
 * the direction setup/hold value (no real effect on step rate)

If your configuration still starts and doesn't give the "unexpected
realtime delay" message, then the first issue is no problem.

To take care of the second issue, find the lines in your hal file
setting dirsetup/dirhold and add 2000 to them.  This number as computed
by stepconf is simply the datasheet setup/hold timing plus the latency.

Jeff

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