Rainer M Krug <rai...@krugs.de> writes:
Hi Rainer,
sorry for the late reply, I was offline some time.
> I have modified the variable transfer in ob-R.el so that the variable
> transfer code is enclosed as can be seen below.
>
> My idea is that I can fold the R output so that the variable transfer is
> collapsed. I understand that I can use one of the org-outside-org minor
> modes [1] (presumibly utshine?) - but I can't figure out how.
>
> My questions are:
>
> 1) which enclosing should I use to fold the transfer code away?
Outshine is like Org, no enclosing, but file structuring with
(outcommented) headlines.
> 2) which minor mode should I use for this and how can I configure it?
I'm not sure if I understand. When you use ob-R.el, you work in Org
files with R source blocks, right? When do you want to fold the R output
below? When you are in org-mode or when editing source blocks in R-mode?
In the former case, Org-mode is in charge and you don't need
outshine. In the latter case, you could install outshine as described in
the docs and then add outline-minor-mode to the ESS/R mode hook, i.e.
,-------------------------------------------------------------------------------
| ;; outline
| (when (require 'outline nil t)
| (add-hook 'ess-mode-hook 'outline-minor-mode)) ; is that the hook for R-mode?
|
| ;; outshine
| (when (require 'outshine nil t)
| (add-hook 'outline-minor-mode-hook 'outshine-hook-function)
| (setq outshine-use-speed-commands t))
`-------------------------------------------------------------------------------
Outshine headlines are outcommented Org headlines, i.e.
,----------------------------------
| * Beginning org variable transfer
`----------------------------------
becomes
,----------
| ## * Beginning org variable transfer
`----------
in R-mode.
The R output would become an outshine-subtree with the header above,
just like in Org-mode, possibly surrounded by other subtrees.
> --8<---------------cut here---------------start------------->8---
>> ######################################################################
> ## Beginning org variable transfer
> try(detach(.org_variables_), silent=TRUE)
> .org_variables_ <- new.env()
> assign( 'COLUMNS',
> read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428U4A",
> header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ );
> lockBinding('COLUMNS', .org_variables_)
> assign( 'COLS_TO_EVAL',
> read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428hCH",
> header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ );
> lockBinding('COLS_TO_EVAL', .org_variables_)
> assign( 'ALLSPECIES',
> read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428uMN",
> header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ );
> lockBinding('ALLSPECIES', .org_variables_)
> assign( 'SPECIES',
> read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-744287WT",
> header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ );
> lockBinding('SPECIES', .org_variables_)
> assign( 'YEARS',
> read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428IhZ",
> header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ );
> lockBinding('YEARS', .org_variables_)
> assign('PRESENT', 2008, envir = .org_variables_); lockBinding('PRESENT',
> .org_variables_)
> assign('MINEFFORT', 3, envir = .org_variables_); lockBinding('MINEFFORT',
> .org_variables_)
> assign('PROPTRAIN', 0.6, envir = .org_variables_);
> lockBinding('PROPTRAIN', .org_variables_)
> assign('RNGSEED', 13, envir = .org_variables_); lockBinding('RNGSEED',
> .org_variables_)
> assign('RNGKIND', "Mersenne-Twister", envir = .org_variables_);
> lockBinding('RNGKIND', .org_variables_)
> assign('RNGNORMALKIND', "Inversion", envir = .org_variables_);
> lockBinding('RNGNORMALKIND', .org_variables_)
> assign('REFGRID', "./refGrid_8km.rds", envir = .org_variables_);
> lockBinding('REFGRID', .org_variables_)
> assign('IFN', "./__BOX__/IFN/DB_IFN/rds/tabplot.rds", envir =
> .org_variables_); lockBinding('IFN', .org_variables_)
> assign('IFNCOUNT',
> "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.count.8km.rds", envir =
> .org_variables_); lockBinding('IFNCOUNT', .org_variables_)
> assign('IFNMEAN',
> "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.mean.8km.rds", envir =
> .org_variables_); lockBinding('IFNMEAN', .org_variables_)
> assign('IFNPRES',
> "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.pres.8km.rds", envir =
> .org_variables_); lockBinding('IFNPRES', .org_variables_)
> assign('IFNSD', "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.sd.8km.rds",
> envir = .org_variables_); lockBinding('IFNSD', .org_variables_)
> assign('IFNTABTREE', "./__BOX__/IFN/DB_IFN/rds/tabtree.rds", envir =
> .org_variables_); lockBinding('IFNTABTREE', .org_variables_)
> lockEnvironment(.org_variables_)
> attach(.org_variables_)
> save(.org_variables_, file='org_variables.RData')
> ## end org variable transfer
> ######################################################################
> --8<---------------cut here---------------end--------------->8---
>
>
> Footnotes:
> [1] http://orgmode.org/worg/org-tutorials/org-outside-org.html
--
cheers,
Thorsten
