It worked using customize, thanks. And thanks for the explanation, Nick.
At least my approach to set the value would not work at all without an 
explicit call to org-set-emph-re, since it relied on the variable being 
already defined.
It might be of minor interest, anyway, I've attached a patch-suggestion 
that would clearify the usage sufficiently, at least for me...

Best regards, Philipp


On Fri, Aug 17, 2012 at 03:50:35PM -0400, Nick Dokos wrote:
> Sebastien Vauban <wxhgmqzgw...@spammotel.com> wrote:
> 
> > You have to make that customization *before* loading Org in your .emacs 
> > file.
> > Weird, never really understood why, but that's like that.
> > 
> 
> The point is that the value of org-emphasis-alist (as well as the value
> of org-emphasis-regexp-components) is used in order to calculate the
> value of org-emph-re by calling the function org-set-emph-re afterwards:
> it's org-emph-re that's used for the all the gory calculations, not
> org-emphasis-alist, which just provides a nicer interface.
> 
> So if you arrange to call the org-set-emph-re function afterwards, you
> can change org-emphasis-alist at any time. Customize makes it easy, in
> that it does that automatically (see the :set property
> of org-emphasis-alist).
> 
> If you do the setq before loading org, then what happens is that when the
> defcustom is encountered, the value of the :set property (a function) is
> called: the modified value of org-emphasis-alist is then used to calculate
> org-emph-re, instead of the original default. If you do it after, none
> of that happens and it's as if you never changed it.
> 
> Nick
> 
> PS BTW, the docstring for the variable says: "Use customize to modify
>    this, or restart Emacs after changing it" but I'm not sure that's
>    correct: if you change the variable in one session, the value is not
>    going to be propagated to the next session, unless you use customize
>    or put the setq in .emacs. In the latter case, it's not going to work
>    unless you do it the way Seb describes: set it before loading Org.
>    So restarting emacs is *not* enough. Am I missing something?
> 
> 
diff --git a/lisp/org.el b/lisp/org.el
index 3bf338d..c70d94d 100644
--- a/lisp/org.el
+++ b/lisp/org.el
@@ -3770,7 +3770,9 @@ characters, the face to be used by font-lock for 
highlighting in Org-mode
 Emacs buffers, and the HTML tags to be used for this.
 For LaTeX export, see the variable `org-export-latex-emphasis-alist'.
 For DocBook export, see the variable `org-export-docbook-emphasis-alist'.
-Use customize to modify this, or restart Emacs after changing it."
+The value of org-emphasis-alist is used to calculate a regular expression
+during startup; changing it manually may not have an effect.
+You should use customize to modify this. Otherwise, see `org-set-emph-re'."
   :group 'org-appearance
   :set 'org-set-emph-re
   :type '(repeat

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