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On 30/03/11 22:17, Eric Schulte wrote:
> Hi Rainer,
>
> When I tangle this code block (just slightly reformatted for my own
> readability)
>
> #+headers: :var STATE=(vc-state (or (buffer-file-name)
> org-current-export-file))
> #+headers: :var REV=(vc-working-revision (or (buffer-file-name)
> org-current-export-file))
> #+begin_src sh :tangle yes
> rm -rf ./R
> rm -f ./spreadSim.sub
> REVISION=$REV.$STATE
> tar -xf nsa.$REVISION.tar.gz
> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
> for SCENARIO in ./R/scenarios/*.R; do
> export SCENARIO=${SCENARIO#./R/scenarios/}
> qsub nsa.sub
> done
> #+end_src
>
> I get the following tangled output
>
> --8<---------------cut here---------------start------------->8---
>
> REV=$(cat <<'BABEL_TABLE'
> master
> BABEL_TABLE
> )
> STATE=$(cat <<'BABEL_TABLE'
> edited
> BABEL_TABLE
> )
> rm -rf ./R
> rm -f ./spreadSim.sub
> REVISION=$REV.$STATE
> tar -xf nsa.$REVISION.tar.gz
> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
> for SCENARIO in ./R/scenarios/*.R; do
> export SCENARIO=${SCENARIO#./R/scenarios/}
> qsub nsa.sub
> done
> --8<---------------cut here---------------end--------------->8---
>
> Which looks right to me. Could it be something specific about your
> setup which is causing this issue?
Sorry - I did not relize that the way the variables are inserted has
changed - I should have tried the script before asking. It works fine.
Sorry about the noise.
By the way: using
#+headers:
makes the source look much nicer - never used it before, but will
definitely us it now.
Cheers,
Rainer
>
> Cheers -- Eric
>
> Rainer M Krug <r.m.k...@gmail.com> writes:
>
>> Hi
>>
>> when I tangle this document, I get the results in the section below.
>> This is obviously not correct. This worked in an earlier version.
>>
>> Any help appreciated,
>>
>> Rainer
>>
>>
>> * Run script (./../nsa.sh)
>> :PROPERTIES:
>> :tangle: ./nsa.sh
>> :exports: code
>> :END:
>> ** Update and call submit script
>> :PROPERTIES:
>> :ID: 173c527a-b032-4cc5-89d8-a32c3c0c7cae
>> :END:
>> #+BEGIN_SRC sh :var REV=(vc-working-revision (or (buffer-file-name)
>> org-current-export-file)) :var STATE=(vc-state (or (buffer-file-name)
>> org-current-export-file))
>> rm -rf ./R
>> rm -f ./spreadSim.sub
>> REVISION=$REV.$STATE
>> tar -xf nsa.$REVISION.tar.gz
>> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
>> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
>> for SCENARIO in ./R/scenarios/*.R; do
>> export SCENARIO=${SCENARIO#./R/scenarios/}
>> qsub nsa.sub
>> done
>> #+END_SRC
>>
>> * tangled
>> #+begin_example
>> #!/bin/bash
>> REV=$(cat <<'BABEL_TABLE'
>>
>> BABEL_TABLE
>> )
>> STATE=$(cat <<'BABEL_TABLE'
>>
>> BABEL_TABLE
>> )
>> rm -rf ./R
>> rm -f ./spreadSim.sub
>> REVISION=$REV.$STATE
>> tar -xf nsa.$REVISION.tar.gz
>> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
>> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
>> for SCENARIO in ./R/scenarios/*.R; do
>> export SCENARIO=${SCENARIO#./R/scenarios/}
>> qsub nsa.sub
>> done
>> #+end_example
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa
Tel: +33 - (0)9 53 10 27 44
Cell: +27 - (0)8 39 47 90 42
Fax (SA): +27 - (0)8 65 16 27 82
Fax (D) : +49 - (0)3 21 21 25 22 44
Fax (FR): +33 - (0)9 58 10 27 44
email: rai...@krugs.de
Skype: RMkrug
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