I want to write guides for using Linux Shell. I first tried the features that knitr offers for this via R (http://yihui.name/knitr/demo/engines), but that turned out to be a fail because the shell session was not persistent across code chunks and the working directory was not change-able in a graceful way.
Mr. Google says org mode in Emacs can work. I'll try that! (I said on Wednesday). For 2 days I've been fighting with the install & configuration. I am pretty sure I'm caught in a Bermuda triangle configuration, where org-mode that comes with Emacs is too old, but the new one from ELPA results in a fail because its pieces are not finding what they want. I'm running Ubuntu 16.10 with Emacs24.5.1. The org mode that comes with Emacs sorta works. There is no color highlighting in the Emacs session. I can do C-c C-c and the chunks do run. There's no persistent session, but it looks like setting the working directory for each chunk solves about 85% of problem. Unfortunately, the HTML output is completely white. There's a small glimmer of hope in this mission, but the end result is too poor to put to use. Then I got courageous and everything went to hell. After installing org mode from elpa, and then org mode from the elpa server hosted by the org mode server, then org-plus-contrib. In the process, I think I have found all of the stupid error messages that others have posted in this list. I'm punch drunk from putting packages in and debugging Emacs init. I'm stopping to ask for some help. When I install org-plus-contrib, there are plenty of compiler warnings. And Emacs itself cannot load, it chokes on this: File mode specification error: (invalid-function org-babel-header-args-safe-fn) That's gotta mean I should not ignore the installer warnings with org-plus-contrib-20161102, can you help me? Here they are: Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-C.el at Sat Nov 12 18:56:20 2016 Entering directory `/home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/' In end of data: ob-C.el:448:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-J.el at Sat Nov 12 18:56:20 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-R.el at Sat Nov 12 18:56:21 2016 ob-R.el:70:11:Warning: reference to free variable `org-babel-safe-header-args' ob-R.el:408:1:Warning: Unused lexical variable `raw' In end of data: ob-R.el:470:1:Warning: the following functions are not known to be defined: org-babel-header-args-safe-fn, org-babel-graphical-output-file, org-babel--get-vars Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-abc.el at Sat Nov 12 18:56:21 2016 In end of data: ob-abc.el:93:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-asymptote.el at Sat Nov 12 18:56:21 2016 In end of data: ob-asymptote.el:140:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-awk.el at Sat Nov 12 18:56:21 2016 In end of data: ob-awk.el:112:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-calc.el at Sat Nov 12 18:56:21 2016 In end of data: ob-calc.el:111:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-clojure.el at Sat Nov 12 18:56:21 2016 In end of data: ob-clojure.el:119:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-comint.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-coq.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-core.el at Sat Nov 12 18:56:21 2016 In org-babel-check-confirm-evaluate: ob-core.el:221:8:Warning: function org-babel-check-confirm-evaluate used to take 1+ arguments, now takes 1 ob-core.el:221:8:Warning: macro `org-babel-check-confirm-evaluate' being redefined as a function ob-core.el:248:1:Warning: Unused lexical variable `block-name' ob-core.el:248:1:Warning: Unused lexical variable `code-block' ob-core.el:248:1:Warning: Unused lexical variable `query' ob-core.el:248:1:Warning: Unused lexical variable `noeval' In org-babel-check-evaluate: ob-core.el:248:34:Warning: value returned from (format " (%s) " --name) is unused ob-core.el:263:1:Warning: Unused lexical variable `block-name' ob-core.el:263:1:Warning: Unused lexical variable `code-block' ob-core.el:263:1:Warning: Unused lexical variable `query' ob-core.el:263:1:Warning: Unused lexical variable `noeval' In org-babel-confirm-evaluate: ob-core.el:263:36:Warning: value returned from (format " (%s) " --name) is unused In org-babel-set-current-result-hash: ob-core.el:1276:8:Warning: function org-babel-set-current-result-hash used to take 1 argument, now takes 2 In org-babel-find-named-result: ob-core.el:1741:8:Warning: function org-babel-find-named-result used to take 1-2 arguments, now takes 1 In org-babel-where-is-src-block-result: ob-core.el:1913:8:Warning: function org-babel-where-is-src-block-result used to take 0-4 arguments, now takes 0-3 In org-babel-insert-result: ob-core.el:2087:8:Warning: function org-babel-insert-result used to take 1-6 arguments, now takes 1-5 In end of data: ob-core.el:3101:1:Warning: the function `org-unbracket-string' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-csharp.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-css.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-ditaa.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-dot.el at Sat Nov 12 18:56:21 2016 In end of data: ob-dot.el:91:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-ebnf.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-emacs-lisp.el at Sat Nov 12 18:56:21 2016 In end of data: ob-emacs-lisp.el:95:1:Warning: the following functions are not known to be defined: org-babel--get-vars, org-babel-make-language-alias Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-eukleides.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-eval.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-exp.el at Sat Nov 12 18:56:21 2016 In org-babel-exp-src-block: ob-exp.el:67:8:Warning: function org-babel-exp-src-block used to take 0+ arguments, now takes 0 ob-exp.el:98:27:Warning: reference to free variable `org-babel-exp-reference-buffer' In org-babel-exp-process-buffer: ob-exp.el:175:21:Warning: org-babel-get-src-block-info called with 2 arguments, but accepts only 0-1 In org-babel-exp-do-export: ob-exp.el:281:51:Warning: org-babel-exp-code called with 2 arguments, but accepts only 1 ob-exp.el:284:45:Warning: org-babel-exp-code called with 2 arguments, but accepts only 1 In org-babel-exp-code: ob-exp.el:329:8:Warning: function org-babel-exp-code used to take 1 argument, now takes 2 ob-exp.el:337:17:Warning: reference to free variable `org-babel-exp-reference-buffer' In org-babel-exp-results: ob-exp.el:365:19:Warning: reference to free variable `org-babel-exp-reference-buffer' In end of data: ob-exp.el:397:1:Warning: the function `org-babel-remove-inline-result' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-fomus.el at Sat Nov 12 18:56:21 2016 In end of data: ob-fomus.el:93:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-forth.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-fortran.el at Sat Nov 12 18:56:21 2016 In end of data: ob-fortran.el:169:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-gnuplot.el at Sat Nov 12 18:56:21 2016 In end of data: ob-gnuplot.el:279:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-groovy.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-haskell.el at Sat Nov 12 18:56:21 2016 ob-haskell.el:62:1:Warning: Unused lexical variable `raw' In end of data: ob-haskell.el:214:1:Warning: the following functions are not known to be defined: org-babel-strip-quotes, org-babel--get-vars Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-io.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-java.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-js.el at Sat Nov 12 18:56:21 2016 ob-js.el:61:1:Warning: Unused lexical variable `raw' In end of data: ob-js.el:165:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-julia.el at Sat Nov 12 18:56:21 2016 In end of data: ob-julia.el:302:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-keys.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-latex.el at Sat Nov 12 18:56:21 2016 In end of data: ob-latex.el:227:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-ledger.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-lilypond.el at Sat Nov 12 18:56:21 2016 In end of data: ob-lilypond.el:413:1:Warning: the following functions are not known to be defined: org-babel--get-vars, outline-show-all Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-lisp.el at Sat Nov 12 18:56:21 2016 In end of data: ob-lisp.el:128:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-lob.el at Sat Nov 12 18:56:21 2016 ob-lob.el:48:1:Warning: Unused lexical variable `end-body' ob-lob.el:48:1:Warning: Unused lexical variable `beg-body' ob-lob.el:48:1:Warning: Unused lexical variable `body' ob-lob.el:48:1:Warning: Unused lexical variable `end-header-args' ob-lob.el:48:1:Warning: Unused lexical variable `beg-header-args' ob-lob.el:48:1:Warning: Unused lexical variable `header-args' ob-lob.el:48:1:Warning: Unused lexical variable `end-switches' ob-lob.el:48:1:Warning: Unused lexical variable `beg-switches' ob-lob.el:48:1:Warning: Unused lexical variable `switches' ob-lob.el:48:1:Warning: Unused lexical variable `end-lang' ob-lob.el:48:1:Warning: Unused lexical variable `beg-lang' ob-lob.el:48:1:Warning: Unused lexical variable `lang' ob-lob.el:48:1:Warning: Unused lexical variable `beg-block' ob-lob.el:48:1:Warning: Unused lexical variable `full-block' In org-babel-lob--src-info: ob-lob.el:86:28:Warning: reference to free variable `org-babel-exp-reference-buffer' ob-lob.el:97:26:Warning: org-babel-get-src-block-info called with 2 arguments, but accepts only 0-1 ob-lob.el:98:27:Warning: org-babel-lob-get-info called with 1 argument, but accepts only 0 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-lua.el at Sat Nov 12 18:56:21 2016 ob-lua.el:317:1:Warning: Unused lexical variable `raw' ob-lua.el:317:1:Warning: Unused lexical variable `raw' In end of data: ob-lua.el:404:1:Warning: the following functions are not known to be defined: org-babel--get-vars, org-unbracket-string Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-makefile.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-mathematica.el at Sat Nov 12 18:56:21 2016 In org-babel-prep-session:mathematica: ob-mathematica.el:69:8:Warning: function org-babel-prep-session:mathematica used to take 2 arguments, now takes 3 ob-mathematica.el:69:8:Warning: function `org-babel-prep-session:mathematica' defined multiple times in this file In end of data: ob-mathematica.el:82:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-mathomatic.el at Sat Nov 12 18:56:21 2016 In end of data: ob-mathomatic.el:146:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-matlab.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-maxima.el at Sat Nov 12 18:56:21 2016 In end of data: ob-maxima.el:128:1:Warning: the following functions are not known to be defined: org-babel--get-vars, org-babel-graphical-output-file Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-mscgen.el at Sat Nov 12 18:56:21 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-ocaml.el at Sat Nov 12 18:56:21 2016 ob-ocaml.el:61:1:Warning: Unused lexical variable `raw' In end of data: ob-ocaml.el:172:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-octave.el at Sat Nov 12 18:56:21 2016 ob-octave.el:190:1:Warning: Unused lexical variable `raw' In end of data: ob-octave.el:267:1:Warning: the following functions are not known to be defined: org-babel-graphical-output-file, org-babel--get-vars, org-babel-strip-quotes Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-org.el at Sat Nov 12 18:56:22 2016 In end of data: ob-org.el:73:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-oz.el at Sat Nov 12 18:56:22 2016 In org-babel-oz-initiate-session: ob-oz.el:274:19:Warning: reference to free variable `oz-compiler-buffer' In end of data: ob-oz.el:295:1:Warning: the following functions are not known to be defined: run-oz, oz-send-string, org-babel--get-vars Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-perl.el at Sat Nov 12 18:56:22 2016 In end of data: ob-perl.el:158:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-picolisp.el at Sat Nov 12 18:56:22 2016 ob-picolisp.el:96:1:Warning: Unused lexical variable `raw' In end of data: ob-picolisp.el:188:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-plantuml.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-processing.el at Sat Nov 12 18:56:22 2016 In end of data: ob-processing.el:196:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-python.el at Sat Nov 12 18:56:22 2016 ob-python.el:281:1:Warning: Unused lexical variable `raw' ob-python.el:281:1:Warning: Unused lexical variable `raw' In end of data: ob-python.el:347:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-ref.el at Sat Nov 12 18:56:22 2016 In org-babel-ref-resolve: ob-ref.el:126:30:Warning: reference to free variable `org-babel-exp-reference-buffer' In end of data: ob-ref.el:250:1:Warning: the function `org-babel-read-element' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-ruby.el at Sat Nov 12 18:56:22 2016 ob-ruby.el:187:1:Warning: Unused lexical variable `raw' ob-ruby.el:187:1:Warning: Unused lexical variable `raw' ob-ruby.el:187:1:Warning: Unused lexical variable `raw' In end of data: ob-ruby.el:262:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-sass.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-scala.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-scheme.el at Sat Nov 12 18:56:22 2016 In end of data: ob-scheme.el:209:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-screen.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-sed.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-shell.el at Sat Nov 12 18:56:22 2016 In org-babel-execute:shell: ob-shell.el:80:7:Warning: org-babel-sh-evaluate called with 5 arguments, but accepts only 2-4 In org-babel-variable-assignments:sh-generic: ob-shell.el:109:28:Warning: org-babel-sh-var-to-sh called with 3 arguments, but accepts only 1-2 In org-babel-variable-assignments:bash_array: ob-shell.el:117:25:Warning: org-babel-sh-var-to-sh called with 3 arguments, but accepts only 1-2 In org-babel-variable-assignments:bash_assoc: ob-shell.el:130:13:Warning: org-babel-sh-var-to-sh called with 3 arguments, but accepts only 1-2 ob-shell.el:131:41:Warning: org-babel-sh-var-to-sh called with 3 arguments, but accepts only 1-2 In org-babel-sh-var-to-sh: ob-shell.el:164:13:Warning: org-babel-sh-var-to-string called with 3 arguments, but accepts only 1-2 ob-shell.el:196:1:Warning: Unused lexical variable `raw' In end of data: ob-shell.el:276:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-shen.el at Sat Nov 12 18:56:22 2016 In end of data: ob-shen.el:79:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-sql.el at Sat Nov 12 18:56:22 2016 In end of data: ob-sql.el:284:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-sqlite.el at Sat Nov 12 18:56:22 2016 In end of data: ob-sqlite.el:162:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-stan.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-stata.el at Sat Nov 12 18:56:22 2016 In end of data: ob-stata.el:313:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-table.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-tangle.el at Sat Nov 12 18:56:22 2016 ob-tangle.el:404:1:Warning: Unused lexical variable `end-body' ob-tangle.el:404:1:Warning: Unused lexical variable `beg-body' ob-tangle.el:404:1:Warning: Unused lexical variable `body' ob-tangle.el:404:1:Warning: Unused lexical variable `end-header-args' ob-tangle.el:404:1:Warning: Unused lexical variable `beg-header-args' ob-tangle.el:404:1:Warning: Unused lexical variable `header-args' ob-tangle.el:404:1:Warning: Unused lexical variable `end-switches' ob-tangle.el:404:1:Warning: Unused lexical variable `beg-switches' ob-tangle.el:404:1:Warning: Unused lexical variable `switches' ob-tangle.el:404:1:Warning: Unused lexical variable `end-lang' ob-tangle.el:404:1:Warning: Unused lexical variable `beg-lang' ob-tangle.el:404:1:Warning: Unused lexical variable `lang' ob-tangle.el:404:1:Warning: Unused lexical variable `beg-block' ob-tangle.el:404:1:Warning: Unused lexical variable `full-block' Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-tcl.el at Sat Nov 12 18:56:22 2016 In end of data: ob-tcl.el:129:1:Warning: the function `org-babel--get-vars' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob-vbnet.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/ob.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-agenda.el at Sat Nov 12 18:56:22 2016 In org-tags-view: org-agenda.el:4846:20:Warning: assignment to free variable `org--matcher-tags-todo-only' org-agenda.el:4872:24:Warning: reference to free variable `org--matcher-tags-todo-only' In org-agenda-show-1: org-agenda.el:8718:6:Warning: org-cycle-hide-drawers called with 2 arguments, but accepts only 1 In org-agenda-insert-diary-as-top-level: org-agenda.el:9503:4:Warning: org-insert-heading called with 3 arguments, but accepts only 0-2 In end of data: org-agenda.el:10200:1:Warning: the following functions are not known to be defined: org-deadline-close-p, org-at-planning-p, org-get-at-eol, outline-show-subtree, outline-hide-subtree, outline-show-entry, org-show-children, org-end-of-meta-data, org-show-set-visibility Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-annotate-file.el at Sat Nov 12 18:56:22 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-archive.el at Sat Nov 12 18:56:23 2016 In end of data: org-archive.el:609:1:Warning: the following functions are not known to be defined: outline-show-all, outline-show-subtree, outline-hide-subtree Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-attach.el at Sat Nov 12 18:56:23 2016 org-attach.el:42:1:Error: Symbol's function definition is void: org-link-set-parameters Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-bbdb.el at Sat Nov 12 18:56:23 2016 In end of data: org-bbdb.el:507:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-bibtex-extras.el at Sat Nov 12 18:56:23 2016 org-bibtex-extras.el:66:1:Warning: defcustom for `obe-bibtex-file' fails to specify containing group org-bibtex-extras.el:66:1:Warning: defcustom for `obe-bibtex-file' fails to specify containing group org-bibtex-extras.el:68:1:Warning: defcustom for `obe-html-link-base' fails to specify containing group org-bibtex-extras.el:68:1:Warning: defcustom for `obe-html-link-base' fails to specify containing group In obe-meta-to-json: org-bibtex-extras.el:105:41:Warning: `flet' is an obsolete macro (as of 24.3); use either `cl-flet' or `cl-letf'. org-bibtex-extras.el:102:63:Warning: function `position' from cl package called at runtime org-bibtex-extras.el:113:49:Warning: function `remove-duplicates' from cl package called at runtime org-bibtex-extras.el:113:49:Warning: function `remove-if' from cl package called at runtime org-bibtex-extras.el:113:11:Warning: function `remove-duplicates' from cl package called at runtime In end of data: org-bibtex-extras.el:138:1:Warning: the function `meta-to-links' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-bibtex.el at Sat Nov 12 18:56:23 2016 In org-bibtex: org-bibtex.el:552:8:Warning: function org-bibtex used to take 0-1 arguments, now takes 1 In end of data: org-bibtex.el:738:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-bookmark.el at Sat Nov 12 18:56:23 2016 In end of data: org-bookmark.el:90:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-bullets.el at Sat Nov 12 18:56:23 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-capture.el at Sat Nov 12 18:56:23 2016 In end of data: org-capture.el:1909:1:Warning: the following functions are not known to be defined: org-datetree-find-iso-week-create, outline-show-all, org-end-of-meta-data Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-checklist.el at Sat Nov 12 18:56:23 2016 In org-make-checklist-export: org-checklist.el:123:10:Warning: print called with 0 arguments, but requires 1-2 org-checklist.el:127:46:Warning: reference to free variable `a2ps-switches' In org-checklist: org-checklist.el:133:17:Warning: reference to free variable `org-state' In end of data: org-checklist.el:142:1:Warning: the function `a2ps-buffer' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-choose.el at Sat Nov 12 18:56:23 2016 org-choose.el:67:1:Warning: cl package required at runtime Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-clock.el at Sat Nov 12 18:56:23 2016 In org-clock-jump-to-current-clock: org-clock.el:964:15:Warning: org-flag-drawer called with 2 arguments, but accepts only 1 In org-clock-remove-empty-clock-drawer: org-clock.el:1653:13:Warning: org-remove-empty-drawer-at called with 1 argument, but requires 2 In org-clock-cancel: org-clock.el:1722:13:Warning: org-remove-empty-drawer-at called with 1 argument, but requires 2 In end of data: org-clock.el:3016:1:Warning: the following functions are not known to be defined: format-message, org-end-of-meta-data, org-font-lock-ensure Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-collector.el at Sat Nov 12 18:56:23 2016 In org-dblock-write:propview: org-collector.el:133:23:Warning: assignment to free variable `idpos' org-collector.el:133:23:Warning: reference to free variable `idpos' org-collector.el:136:13:Warning: assignment to free variable `stringformat' org-collector.el:140:57:Warning: reference to free variable `stringformat' Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-colview.el at Sat Nov 12 18:56:23 2016 In end of data: org-colview.el:1645:1:Warning: the following functions are not known to be defined: org-get-priority-face, org-edit-headline, outline-hide-entry Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-compat.el at Sat Nov 12 18:56:23 2016 In end of data: org-compat.el:491:1:Warning: the function `org-unbracket-string' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-contacts.el at Sat Nov 12 18:56:23 2016 In end of data: org-contacts.el:1151:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-contribdir.el at Sat Nov 12 18:56:23 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-crypt.el at Sat Nov 12 18:56:24 2016 In end of data: org-crypt.el:272:1:Warning: the following functions are not known to be defined: org-end-of-meta-data, outline-hide-subtree Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-ctags.el at Sat Nov 12 18:56:24 2016 In end of data: org-ctags.el:534:1:Warning: the following functions are not known to be defined: xref-find-definitions, format-message Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-datetree.el at Sat Nov 12 18:56:24 2016 In end of data: org-datetree.el:232:1:Warning: the function `org-find-property' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-depend.el at Sat Nov 12 18:56:24 2016 In org-depend-trigger-todo: org-depend.el:284:61:Warning: function `position' from cl package called at runtime org-depend.el:345:47:Warning: function `subseq' from cl package called at runtime org-depend.el:290:17:Warning: function `subseq' from cl package called at runtime org-depend.el:301:14:Warning: function `remove-if' from cl package called at runtime Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-docview.el at Sat Nov 12 18:56:24 2016 In end of data: org-docview.el:104:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-drill.el at Sat Nov 12 18:56:24 2016 org-drill.el:50:1:Error: Symbol's function definition is void: org-link-set-parameters Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-ebib.el at Sat Nov 12 18:56:24 2016 In org-ebib-store-link: org-ebib.el:39:76:Warning: reference to free variable `ebib-cur-db' In end of data: org-ebib.el:48:1:Warning: the following functions are not known to be defined: org-link-set-parameters, ebib, ebib-cur-entry-key, ebib-db-get-field-value Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-effectiveness.el at Sat Nov 12 18:56:24 2016 In org-effectiveness: org-effectiveness.el:97:11:Warning: assignment to free variable `effectiveness' org-effectiveness.el:98:8:Warning: reference to free variable `effectiveness' In org-effectiveness-keywords-in-date: org-effectiveness.el:102:4:Warning: malformed interactive spec: (interactive "sKeyword: sDate: " keyword date) org-effectiveness.el:104:38:Warning: assignment to free variable `count' org-effectiveness.el:104:30:Warning: reference to free variable `count' In org-effectiveness-dones-in-date: org-effectiveness.el:107:4:Warning: malformed interactive spec: (interactive "sGive me a date: " date) In org-effectiveness-todos-in-date: org-effectiveness.el:116:4:Warning: malformed interactive spec: (interactive "sGive me a date: " date) org-effectiveness.el:120:26:Warning: assignment to free variable `count' org-effectiveness.el:120:6:Warning: reference to free variable `count' In org-effectiveness-canceled-in-date: org-effectiveness.el:123:4:Warning: malformed interactive spec: (interactive "sGive me a date: " date) org-effectiveness.el:127:30:Warning: assignment to free variable `count' org-effectiveness.el:127:6:Warning: reference to free variable `count' In org-effectiveness-ntasks-in-date: org-effectiveness.el:130:4:Warning: malformed interactive spec: (interactive "sGive me a date: " date) In org-effectiveness-in-date: org-effectiveness.el:137:4:Warning: malformed interactive spec: (interactive "sGive me a date: " date) org-effectiveness.el:144:11:Warning: assignment to free variable `effectiveness' org-effectiveness.el:147:35:Warning: reference to free variable `effectiveness' In org-effectiveness-plot: org-effectiveness.el:155:4:Warning: malformed interactive spec: (interactive "sGive me the start date: sGive me the end date: " startdate enddate) org-effectiveness.el:157:38:Warning: assignment to free variable `dates' org-effectiveness.el:159:36:Warning: reference to free variable `dates' org-effectiveness.el:157:9:Warning: assignment to free variable `syear' org-effectiveness.el:158:9:Warning: assignment to free variable `smonth' org-effectiveness.el:159:9:Warning: assignment to free variable `eyear' org-effectiveness.el:160:9:Warning: assignment to free variable `emonth' org-effectiveness.el:175:10:Warning: assignment to free variable `startyear' org-effectiveness.el:177:37:Warning: assignment to free variable `startmonth' org-effectiveness.el:175:20:Warning: assignment to free variable `endyear' org-effectiveness.el:177:48:Warning: assignment to free variable `endmonth' org-effectiveness.el:181:11:Warning: reference to free variable `startyear' org-effectiveness.el:183:19:Warning: reference to free variable `endyear' org-effectiveness.el:180:16:Warning: reference to free variable `startmonth' org-effectiveness.el:183:59:Warning: reference to free variable `endmonth' org-effectiveness.el:194:11:Warning: assignment to free variable `strplot' org-effectiveness.el:196:39:Warning: reference to free variable `strplot' In org-effectiveness-plot-save: org-effectiveness.el:200:4:Warning: malformed interactive spec: (interactive "sGive me the start date: sGive me the end date: " startdate enddate) In org-effectiveness-check-dates: org-effectiveness.el:249:13:Warning: assignment to free variable `str' org-effectiveness.el:261:10:Warning: assignment to free variable `startyear' org-effectiveness.el:263:37:Warning: assignment to free variable `startmonth' org-effectiveness.el:261:20:Warning: assignment to free variable `endyear' org-effectiveness.el:263:48:Warning: assignment to free variable `endmonth' org-effectiveness.el:268:18:Warning: reference to free variable `startyear' org-effectiveness.el:268:76:Warning: reference to free variable `endyear' org-effectiveness.el:268:57:Warning: reference to free variable `startmonth' org-effectiveness.el:268:100:Warning: reference to free variable `endmonth' org-effectiveness.el:268:100:Warning: reference to free variable `str' In org-effectiveness-plot-ascii: org-effectiveness.el:271:4:Warning: malformed interactive spec: (interactive "sGive me the start date: sGive me the end date: " startdate enddate) org-effectiveness.el:273:39:Warning: assignment to free variable `dates' org-effectiveness.el:275:34:Warning: reference to free variable `dates' In org-effectiveness-plot-ascii-ntasks: org-effectiveness.el:295:4:Warning: malformed interactive spec: (interactive "sGive me the start date: sGive me the end date: " startdate enddate) org-effectiveness.el:297:39:Warning: assignment to free variable `dates' org-effectiveness.el:299:34:Warning: reference to free variable `dates' In org-effectiveness-plot-ascii-dones: org-effectiveness.el:318:4:Warning: malformed interactive spec: (interactive "sGive me the start date: sGive me the end date: " startdate enddate) org-effectiveness.el:320:39:Warning: assignment to free variable `dates' org-effectiveness.el:322:34:Warning: reference to free variable `dates' In org-effectiveness-plot-html: org-effectiveness.el:343:4:Warning: malformed interactive spec: (interactive "sGive me the start date: sGive me the end date: " startdate enddate) org-effectiveness.el:345:39:Warning: assignment to free variable `dates' org-effectiveness.el:347:34:Warning: reference to free variable `dates' Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-eldoc.el at Sat Nov 12 18:56:24 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-element.el at Sat Nov 12 18:56:24 2016 In org-element--get-node-properties: org-element.el:938:25:Warning: reference to free variable `org-planning-line-re' In org-element--get-time-properties: org-element.el:953:45:Warning: reference to free variable `org-planning-line-re' In org-element-headline-parser: org-element.el:1058:9:Warning: org-element--parse-objects called with 5 arguments, but accepts only 4 In org-element-inlinetask-parser: org-element.el:1193:7:Warning: org-element--parse-objects called with 5 arguments, but accepts only 4 In org-element-item-parser: org-element.el:1314:11:Warning: org-element--parse-objects called with 5 arguments, but accepts only 4 In org-element-property-drawer-parser: org-element.el:1494:8:Warning: function org-element-property-drawer-parser used to take 2 arguments, now takes 1 In org-element--current-element: org-element.el:3842:46:Warning: reference to free variable `org-planning-line-re' org-element.el:3852:21:Warning: reference to free variable `org-clock-line-re' In org-element-parse-secondary-string: org-element.el:4090:8:Warning: org-element--parse-objects called with 5 arguments, but accepts only 4 In org-element-interpret-data: org-element.el:4516:8:Warning: function org-element-interpret-data used to take 1-2 arguments, now takes 1 In org-element-at-point: org-element.el:5777:8:Warning: function org-element-at-point used to take 0-1 arguments, now takes 0 In end of data: org-element.el:6114:1:Warning: the following functions are not known to be defined: org-link-types, org-macro-extract-arguments Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-elisp-symbol.el at Sat Nov 12 18:56:24 2016 In org-elisp-symbol-store-link: org-elisp-symbol.el:115:39:Warning: `user-variable-p' is an obsolete function (as of 24.3); use `custom-variable-p' instead. In end of data: org-elisp-symbol.el:162:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-entities.el at Sat Nov 12 18:56:24 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-eshell.el at Sat Nov 12 18:56:24 2016 In end of data: org-eshell.el:67:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-eval-light.el at Sat Nov 12 18:56:24 2016 In org-eval-light-current-snippet: org-eval-light.el:132:8:Warning: `goto-line' is for interactive use only; use `forward-line' instead. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-eval.el at Sat Nov 12 18:56:24 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-eww.el at Sat Nov 12 18:56:24 2016 In end of data: org-eww.el:173:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-expiry.el at Sat Nov 12 18:56:24 2016 In org-expiry-process-entry: org-expiry.el:240:4:Warning: misplaced interactive spec: `(interactive)' org-expiry.el:242:12:Warning: called-interactively-p called with 0 arguments, but requires 1 In org-expiry-insert-expiry: org-expiry.el:328:11:Warning: assignment to free variable `timestr' org-expiry.el:328:42:Warning: reference to free variable `timestr' Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-faces.el at Sat Nov 12 18:56:24 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-feed.el at Sat Nov 12 18:56:24 2016 In end of data: org-feed.el:714:1:Warning: the following functions are not known to be defined: outline-hide-subtree, org-show-children, format-message Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-footnote.el at Sat Nov 12 18:56:24 2016 In org-footnote-all-labels: org-footnote.el:597:8:Warning: function org-footnote-all-labels used to take 0-1 arguments, now takes 0 In org-footnote-normalize: org-footnote.el:828:8:Warning: function org-footnote-normalize used to take 0-1 arguments, now takes 0 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-git-link.el at Sat Nov 12 18:56:24 2016 In org-git-open: org-git-link.el:106:42:Warning: `goto-line' is for interactive use only; use `forward-line' instead. org-git-link.el:106:17:Warning: `string-to-int' is an obsolete function (as of 22.1); use `string-to-number' instead. In end of data: org-git-link.el:226:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-gnus.el at Sat Nov 12 18:56:24 2016 In end of data: org-gnus.el:296:1:Warning: the following functions are not known to be defined: org-link-set-parameters, org-unbracket-string Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-habit.el at Sat Nov 12 18:56:24 2016 In org-habit-parse-todo: org-habit.el:205:11:Warning: reference to free variable `org-ts-regexp-inactive' Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-id.el at Sat Nov 12 18:56:25 2016 In end of data: org-id.el:686:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-indent.el at Sat Nov 12 18:56:25 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-index.el at Sat Nov 12 18:56:25 2016 org-index.el:197:19:Warning: reference to free variable `org-index--buffer' In end of data: org-index.el:3007:1:Warning: the following functions might not be defined at runtime: unhighlight-regexp, highlight-regexp org-index.el:3007:1:Warning: the following functions are not known to be defined: font-lock-ensure, font-lock-flush Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-info.el at Sat Nov 12 18:56:25 2016 In end of data: org-info.el:132:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-inlinetask.el at Sat Nov 12 18:56:25 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-interactive-query.el at Sat Nov 12 18:56:25 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-invoice.el at Sat Nov 12 18:56:25 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-irc.el at Sat Nov 12 18:56:25 2016 In end of data: org-irc.el:254:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-learn.el at Sat Nov 12 18:56:25 2016 In calculate-new-optimal-factor: org-learn.el:127:12:Warning: assignment to free variable `new-of' org-learn.el:130:12:Warning: reference to free variable `new-of' In org-smart-reschedule: org-learn.el:162:25:Warning: function `copy-list' from cl package called at runtime Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-license.el at Sat Nov 12 18:56:25 2016 In org-license-cc-by: org-license.el:46:4:Warning: malformed interactive spec: (interactive "MLanguage ( br | ca | de | en | es | eo | eu | fi | fr | gl | it | jp | nl | pt ): " language) org-license.el:46:4:Warning: value returned from (concat (insert "* License This document is under a [[" org-license-cc-url "][Creative Commons Attribution 4.0 International]] ")) is unused org-license.el:48:12:Warning: assignment to free variable `org-license-cc-url' org-license.el:50:56:Warning: reference to free variable `org-license-cc-url' In org-license-cc-by-sa: org-license.el:108:4:Warning: malformed interactive spec: (interactive "MLanguage ( br | ca | de | en | es | eu | fi | fr | it | jp | nl | pt ): " language) org-license.el:108:4:Warning: value returned from (concat (insert "* Licença Este texto é disponibilizado nos termos da licença [[" org-license-cc-url "][Atribuição Compartil ha Igual 3.0 Brasil]] ")) is unused org-license.el:108:4:Warning: value returned from (concat (insert "* Licencia Este documento está bajo una [[" org-license-cc-url "][Licencia Creative Commons Atribución Compartir por Igual 3.0 España]] ")) is unused org-license.el:108:4:Warning: value returned from (concat (insert "* Licenzua Testua [[" org-license-cc-url "][Aitortu-PartekatuBerdin 3.0 Espainia]] lizentziari jarraituz erabil daiteke ")) is unused org-license.el:108:4:Warning: value returned from (concat (insert "* Licence Ce(tte) œuvre est mise à disposition selon les termes de la [[" org-license-cc-url "][Licence Creative Commons Attribution - Partage dans les Mêmes Conditions 3.0 France]] ")) is unused org-license.el:110:12:Warning: assignment to free variable `org-license-cc-url' org-license.el:112:56:Warning: reference to free variable `org-license-cc-url' In org-license-cc-by-nd: org-license.el:166:4:Warning: malformed interactive spec: (interactive "MLanguage ( br | ca | de | en | es | eu | fi | fr | it | pt ): " language) org-license.el:168:12:Warning: assignment to free variable `org-license-cc-url' org-license.el:170:56:Warning: reference to free variable `org-license-cc-url' In org-license-cc-by-nc: org-license.el:225:4:Warning: malformed interactive spec: (interactive "MLanguage ( br | ca | de | en | es | eu | fi | fr | it | jp | nl | pt ): " language) org-license.el:227:12:Warning: assignment to free variable `org-license-cc-url' org-license.el:229:56:Warning: reference to free variable `org-license-cc-url' In org-license-cc-by-nc-sa: org-license.el:283:4:Warning: malformed interactive spec: (interactive "MLanguage ( br | ca | de | en | es | eu | fi | fr | gl | it | jp | nl | pt ): " language) org-license.el:285:12:Warning: assignment to free variable `org-license-cc-url' org-license.el:287:56:Warning: reference to free variable `org-license-cc-url' In org-license-cc-by-nc-nd: org-license.el:341:4:Warning: malformed interactive spec: (interactive "MLanguage ( br | ca | de | en | es | eu | fi | fr | gl | it | pt ): " language) org-license.el:343:12:Warning: assignment to free variable `org-license-cc-url' org-license.el:345:56:Warning: reference to free variable `org-license-cc-url' In org-license-gfdl: org-license.el:399:4:Warning: malformed interactive spec: (interactive "MLanguage (es | en): " language) In org-license-publicdomain-zero: org-license.el:420:4:Warning: malformed interactive spec: (interactive "MLanguage ( en | es ): " language) org-license.el:421:9:Warning: assignment to free variable `org-license-pd-url' org-license.el:422:9:Warning: assignment to free variable `org-license-pd-file' org-license.el:425:43:Warning: reference to free variable `org-license-pd-url' org-license.el:430:86:Warning: reference to free variable `org-license-pd-file' In org-license-publicdomain-mark: org-license.el:433:4:Warning: malformed interactive spec: (interactive "MLanguage ( en | es ): " language) org-license.el:434:9:Warning: assignment to free variable `org-license-pd-url' org-license.el:435:9:Warning: assignment to free variable `org-license-pd-file' org-license.el:438:43:Warning: reference to free variable `org-license-pd-url' org-license.el:443:86:Warning: reference to free variable `org-license-pd-file' Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-link-edit.el at Sat Nov 12 18:56:25 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-lint.el at Sat Nov 12 18:56:25 2016 org-lint.el:107:1:Error: Symbol's function definition is void: org-define-error Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-list.el at Sat Nov 12 18:56:25 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mac-iCal.el at Sat Nov 12 18:56:25 2016 In org-mac-iCal: org-mac-iCal.el:128:34:Warning: assignment to free variable `currentBuffer' org-mac-iCal.el:73:26:Warning: assignment to free variable `openBuffers' org-mac-iCal.el:73:4:Warning: reference to free variable `openBuffers' org-mac-iCal.el:85:6:Warning: assignment to free variable `caldav-folders' org-mac-iCal.el:84:14:Warning: assignment to free variable `caldav-calendars' org-mac-iCal.el:90:31:Warning: reference to free variable `caldav-calendars' org-mac-iCal.el:112:4:Warning: reference to free variable `caldav-folders' org-mac-iCal.el:88:9:Warning: assignment to free variable `local-calendars' org-mac-iCal.el:90:24:Warning: reference to free variable `local-calendars' org-mac-iCal.el:93:9:Warning: assignment to free variable `all-calendars' org-mac-iCal.el:102:31:Warning: reference to free variable `all-calendars' org-mac-iCal.el:120:4:Warning: assignment to free variable `import-calendars' org-mac-iCal.el:119:9:Warning: reference to free variable `import-calendars' org-mac-iCal.el:123:9:Warning: assignment to free variable `usedCalendarsBuffers' org-mac-iCal.el:124:24:Warning: reference to free variable `usedCalendarsBuffers' org-mac-iCal.el:125:9:Warning: assignment to free variable `usedCalendarsFiles' org-mac-iCal.el:126:24:Warning: reference to free variable `usedCalendarsFiles' org-mac-iCal.el:128:4:Warning: reference to free variable `currentBuffer' In omi-concat-leopard-ics: org-mac-iCal.el:142:5:Warning: assignment to free variable `omi-leopard-events' org-mac-iCal.el:141:47:Warning: reference to free variable `omi-leopard-events' In omi-import-ics: org-mac-iCal.el:159:23:Warning: assignment to free variable `startEntry' org-mac-iCal.el:159:34:Warning: assignment to free variable `endEntry' org-mac-iCal.el:181:22:Warning: reference to free variable `startEntry' org-mac-iCal.el:181:33:Warning: reference to free variable `endEntry' org-mac-iCal.el:166:13:Warning: assignment to free variable `yearEntry' org-mac-iCal.el:167:13:Warning: assignment to free variable `monthEntry' org-mac-iCal.el:170:33:Warning: assignment to free variable `year' org-mac-iCal.el:170:25:Warning: assignment to free variable `month' org-mac-iCal.el:170:25:Warning: reference to free variable `month' org-mac-iCal.el:170:25:Warning: reference to free variable `year' org-mac-iCal.el:178:61:Warning: assignment to free variable `now' org-mac-iCal.el:178:61:Warning: reference to free variable `monthEntry' org-mac-iCal.el:178:61:Warning: reference to free variable `yearEntry' org-mac-iCal.el:179:61:Warning: assignment to free variable `entryDate' org-mac-iCal.el:177:21:Warning: assignment to free variable `isRepeating' org-mac-iCal.el:177:21:Warning: reference to free variable `isRepeating' org-mac-iCal.el:178:20:Warning: reference to free variable `now' org-mac-iCal.el:178:20:Warning: reference to free variable `entryDate' org-mac-iCal.el:198:6:Warning: `goto-line' is for interactive use only; use `forward-line' instead. org-mac-iCal.el:188:6:Warning: `goto-line' is for interactive use only; use `forward-line' instead. org-mac-iCal.el:195:8:Warning: `goto-line' is for interactive use only; use `forward-line' instead. org-mac-iCal.el:205:8:Warning: `goto-line' is for interactive use only; use `forward-line' instead. org-mac-iCal.el:201:8:Warning: `goto-line' is for interactive use only; use `forward-line' instead. org-mac-iCal.el:201:8:Warning: `goto-line' is for interactive use only; use `forward-line' instead. In end of data: org-mac-iCal.el:251:1:Warning: the following functions are not known to be defined: xml-get-children, xml-node-children Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mac-link.el at Sat Nov 12 18:56:25 2016 In end of data: org-mac-link.el:948:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-macro.el at Sat Nov 12 18:56:25 2016 In end of data: org-macro.el:310:1:Warning: the function `org-unbracket-string' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-macs.el at Sat Nov 12 18:56:25 2016 Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mairix.el at Sat Nov 12 18:56:25 2016 In org-mairix-open: org-mairix.el:160:32:Warning: assignment to free variable `retval' org-mairix.el:161:55:Warning: reference to free variable `retval' org-mairix.el:162:15:Warning: assignment to free variable `matches' org-mairix.el:163:45:Warning: reference to free variable `matches' In org-mairix-gnus-display-results: org-mairix.el:315:59:Warning: assignment to free variable `message-id' org-mairix.el:315:18:Warning: reference to free variable `message-id' In end of data: org-mairix.el:334:1:Warning: the following functions are not known to be defined: org-link-set-parameters, org-unbracket-string Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-man.el at Sat Nov 12 18:56:25 2016 In end of data: org-man.el:76:1:Warning: the function `org-link-set-parameters' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mew.el at Sat Nov 12 18:56:25 2016 In end of data: org-mew.el:355:1:Warning: the following functions are not known to be defined: org-link-set-parameters, org-unbracket-string Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mhe.el at Sat Nov 12 18:56:25 2016 In end of data: org-mhe.el:220:1:Warning: the following functions are not known to be defined: org-link-set-parameters, org-unbracket-string Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mime.el at Sat Nov 12 18:56:25 2016 org-mime.el:56:1:Warning: cl package required at runtime org-mime.el:106:1:Warning: defcustom for `org-mime-send-subtree-hook' fails to specify containing group org-mime.el:106:1:Warning: defcustom for `org-mime-send-subtree-hook' fails to specify containing group org-mime.el:109:1:Warning: defcustom for `org-mime-send-buffer-hook' fails to specify containing group org-mime.el:109:1:Warning: defcustom for `org-mime-send-buffer-hook' fails to specify containing group In end of data: org-mime.el:346:1:Warning: the function `binary-insert-encoded-file' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mobile.el at Sat Nov 12 18:56:25 2016 In end of data: org-mobile.el:1127:1:Warning: the function `org-tag-alist-to-string' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-mouse.el at Sat Nov 12 18:56:25 2016 In end of data: org-mouse.el:1112:1:Warning: the function `format-message' is not known to be defined. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-notify.el at Sat Nov 12 18:56:26 2016 In org-notify-action-email: org-notify.el:313:12:Warning: `flet' is an obsolete macro (as of 24.3); use either `cl-flet' or `cl-letf'. Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-notmuch.el at Sat Nov 12 18:56:26 2016 In org-notmuch-search-store-link: org-notmuch.el:109:30:Warning: reference to free variable `notmuch-search-query-string' In end of data: org-notmuch.el:136:1:Warning: the following functions are not known to be defined: org-link-set-parameters, notmuch-show-get-message-id, notmuch-show-get-subject, notmuch-show-get-to, notmuch-show-get-from, notmuch-show-get-date, notmuch-show, notmuch-search, notmuch-tree Compiling file /home/pauljohn/.emacs.d/elpa/org-plus-contrib-20161102/org-panel.el at Sat Nov 12 18:56:26 2016 In orgpan-delete-panel: org-panel.el:137:23:Warning: reference to free variable `orgpan-panel-buffer' org-panel.el:140:8:Warning: assignment to free variable `orgpan-panel-buffer' org-panel.el:141:8:Warning: assignment to free variable `orgpan-panel-window' In orgpan-mode-pre-command: -- Paul E. Johnson http://pj.freefaculty.org Director, Center for Research Methods and Data Analysis http://crmda.ku.edu To write to me directly, please address me at pauljohn at ku.edu.