Introduction Bayesian hierarchical models (IBHM02) Instructor: Dr. Andrew Parnell
This course will run from 29th Jan - 2nd Feb 2018 at SCENE (the Scottish Centre for Ecology and the Natural Environment), Loch Lomond National Park, Glasgow. Course overview: This course will cover introductory hierarchical modelling for real-world data sets from a Bayesian perspective. These methods lie at the forefront of statistics research and are a vital tool in the scientist’s toolbox. The course focuses on introducing concepts and demonstrating good practice in hierarchical models. All methods are demonstrated with data sets which participants can run themselves. Participants will be taught how to fit hierarchical models using the Bayesian modelling software Jags and Stan through the R software interface. The course covers the full gamut from simple regression models through to full generalised multivariate hierarchical structures. A Bayesian approach is taken throughout, meaning that participants can include all available information in their models and estimates all unknown quantities with uncertainty. Participants are encouraged to bring their own data sets for discussion with the course tutors. Day 1 Basic concepts • Class 1: Introduction to Bayesian Statistics • Class 2: Linear and generalised linear models (GLMs) • Practical: Using R, Jags and Stan for fitting GLMs • Round table discussion: Understanding Bayesian models Day 2 Hierarchical modelling • Class 1: Simple hierarchical regression models • Class 2: Hierarchical models for non-Gaussian data • Practical: Fitting hierarchical models • Round table discussion: Interpreting hierarchical model output Day 3 Complex Models • Class 1: Hierarchical models vs mixed effects models • Class 2: Multivariate and multi-layer hierarchical models • Practical: Advanced examples of hierarchical models • Round table discussion: Issues of continuous vs discrete time Day 4 Shrinkage and Selection models • Class 1: Shrinkage and variable selection • Class 2: Hierarchical models and partial pooling • Practical: Shrinkage modelling • Round table discussion Bring your own data set Day 5 Final Day • Summary and recap session, catch up time and bring your own data. Please send inquiries to [email protected] or visit the website www.prstatistics.com Please feel free to distribute this information anywhere you think suitable. 1. November 6th – 10th 2017 LANDSCAPE GENETIC DATA ANALYSIS USING R #LNDG Margam Discovery Centre, Wales, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r- lndg02/ 2. November 20th - 25th 2017 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS #ABME SCENE, Scotland, Dr. Matt Denwood http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists- epidemiologists-abme03/ 3. November 27th – December 1st 2017 INTRODUCTION TO PYTHON FOR BIOLOGISTS #IPYB Margam Discovery Centre, Wales, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists- ipyb04/ ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ 4. December 4th - 8th 2017 ADVANCING IN STATISTICAL MODELLING USING R #ADVR Margam Discovery Centre, Wales, Dr. Luc Bussiere, Dr. Tom Houslay, Dr. Ane Timenes Laugen, http://www.prstatistics.com/course/advancing-statistical-modelling-using-r- advr07/ ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ 5. January 29t – February 2nd 2018 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING #IBHM SCENE, Scotland, Dr. Andrew Parnell http://www.prstatistics.com/course/introduction-to-bayesian-hierarchical- modelling-using-r-ibhm02/ 6. January 29th – February 2nd 2018 PHYLOGENETIC DATA ANALYSIS USING R #PHYL SCENE, Scotland, Dr. Emmanuel Paradis https://www.prstatistics.com/course/introduction-to-phylogenetic-analysis- with-r-phyg-phyl02/ ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ 7. February 19th – 23rd 2018 MOVEMENT ECOLOGY #MOVE Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts https://www.prstatistics.com/course/movement-ecology-move01/ 8. February 19th – 23rd 2018 GEOMETRIC MORPHOMETRICS USING R #GMMR Margam Discovery Centre, Wales, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr01/ ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ 9. March 5th – 9th 2018 FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION #FEER Margam Discovery Centre, Wales, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona http://www.prstatistics.com/course/functional-ecology-from-organism-to- ecosystem-theory-and-computation-feer01/ 10. March 5th - 9th 2018 SPATIAL PRIORITIZATION USING MARXAN #MRXN Margam Discovery Centre, Wales, Jennifer McGowan https://www.prstatistics.com/course/introduction-to-marxan-mrxn01/ 11. March 12th - 16th 2018 ECOLOGICAL NICHE MODELLING USING R #ENMR Glasgow, Scotland, Dr. Neftali Sillero http://www.prstatistics.com/course/ecological-niche-modelling-using-r- enmr02/ 12. March 19th – 23rd 2018 BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R #BDML Glasgow, Scotland, Dr William Hoppitt http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum- likelihood-bdml01/ ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ 13. April 9th – 13th 2018 NETWORK ANAYLSIS FOR ECOLOGISTS USING R #NTWA Glasgow, Scotland, Dr. Marco Scotti https://www.prstatistics.com/course/network-analysis-ecologists-ntwa02/ 14. April 16th – 20th 2018 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R #IPSY Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for- psychologists-ipsy01/ 15. April 23rd – 27th 2018 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE #VGNR Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological- communities-in-r-with-the-vegan-package-vgnr01/ 16. April 30th – 4th May 2018 QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES #QGER Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick COMING SOON www.PRstatistics.com ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ 17. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R #MVSP CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet 18. May 14th - 18th 2018 INTRODUCTION TO MIXED MODELS FOR BIOLOGISTS #IMBR CANADA (QUEBEC), Prof Subhash Lele 19. May 21st - 25th 2018 INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi https://www.prinformatics.com/course/introduction-to-remote-sensing-and-gis- for-ecological-applications-irms01/ 20. May 28th – 1st June 2018 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR #SIMM CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ 21. July 2nd - 5th 2018 SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R #SNAR Glasgow, Scotland, Prof James Curley http://www.psstatistics.com/course/social-network-analysis-for-behavioral- scientists-snar01/ 22. July 8th – 12th 2018 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R #MBMV Glasgow, Scotland, Prof David Warton https://www.prstatistics.com/course/model-base-multivariate-analysis-of- abundance-data-using-r-mbmv02/ 23. July 16th – 20th 2018 TRANSCRIPTOME ANALYSIS, VISUALIZATION AND INTERPRETATION #TAVI Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith COMING SOON www.prinformatics.com 24. July 23rd – 27th 2018 EUKARYOTIC METABARCODING Glasgow, Scotland, Dr. Owen Wangensteen http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/ ---------------------------------------------------------------------------- ---------------------------------------------------------------------------- ------------------ -- Oliver Hooker PhD. PR statistics 2017 publications - Ecosystem size predicts eco-morphological variability in post-glacial diversification. Ecology and Evolution. In press. The physiological costs of prey switching reinforce foraging specialization. Journal of animal ecology. prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340
