Martin, I will give you, absolutely and without reservation, that ecosystems 
process matter and energy through organisms.   Since the questions dealt with 
ecosystems, I assumed that the involvement of organisms was a given.  I will 
also give you that what kinds of organisms are involved is of great importance. 
 I believe that gets at the idea of functional diversity that was originally 
what the inquirer was interested in.  I suppose, without having stated it 
explicitly, that I think that the details of the energy and material processing 
are what constitutes functional diversity.  At least that would be my 
understanding and why I responded as I did -- I thought some might be straying 
from that.

Beyond that I might just be both too naive and too dense to see.  David McNeely

---- Martin Meiss <[email protected]> wrote: 
>        It seems to me that saying ecosystem "functions" are the flow of
> matter and energy is a coded way of saying that these are the most
> important things for characterizing ecosystems.  As Neahga Leonard pointed
> out, other systems do these things also, such as stars, volcanoes, oceans,
> etc.  Ecosystems are special because they process matter and energy THROUGH
> ORGANISMS.  Larry Slobodkin, who was on my thesis committee and S.U.N.Y. at
> Stony Brook, used to refer to refer to this emphasis on matter and energy
> flows, with little regard to actual organisms, as "odumology."  He found it
> puzzling that an ecologist wouldn't be particularly concerned with whether
> it was algae or aspens doing the carbon fixation, as long as the carbon was
> being fixed.
> 
>        Nicolas and  others in this thread have stated that the importance
> of this "functional diversity" approach is that it is useful for
> understanding human interactions with ecosystems.  But how does it tell us
> any more about our impact on the environment than measuring changes in
> species abundance?  After all, for the most part we interact with organism
> (well, except for breathing), not directly with potassium or carbon.  If we
> learn that phosphorus in more mobile or more abundant in system A than in
> system B, do we really care unless this difference is reflected in
> organisms and populations?
> 
>        My questions probably reflect my naivete, but if so, perhaps they
> are especially worthy of being addressed.
> 
>       Thank you.
> 
> Martin M. Meiss
> 
> 2012/10/1 Nicolas PERU <[email protected]>
> 
> > Hi, Ted
> >
> >         Your  work is interesting and provide a kind of synthesis on
> > functional
> > aspects of ecosystems. I think that we can all agree on your vision of
> > ecosystem for themselves and not for human interests. Nonetheless, you
> > have created another classification as our human mind need it. But, what
> > about things that would not fall into you categorization of Nature ? And
> > for sure, one day, somebody will find something outside this
> > classification. In this case, should we create another category ? I think
> > that any strict categorization inevitably leads to a need of a
> > multiplication fo categories. This is simply because Nature isn't cut into
> > strict part. Our study of biodiversity should have teach this point to
> > anybody. Even the very well known concept of species is not so clear. For
> > example, some fish "species" can produce some fertile hybrids (e.g.
> > roach-bream). Though, if these individuals from different species can
> > produce fertile descendant they are from the same species, aren't they ?.
> >
> >         So, I do not agree on the fact that we wouldn't need of fuzzy set
> > mathematics. Clearly, they don't muddy our perception of functional
> > diversity or even ecosystem functioning. We must understand that our mind
> > is limited in its capacity to perceive complex mechanisms and particularly
> > in very complex systems such as ecosystems. So, our challenge is to fit
> > our limited perceptions to the complexity of systems. I think that fuzzy
> > mathematics can help us to achieve this part of the problem. Fuzzy
> > mathematics can furnish flexible classifications for example. Hence, we
> > could better match our need to classify things and the continuity of
> > Nature's processes. Once we will have some means to fit our perceptions
> > and real mechanisms in action we will be able to design some practical
> > measures to evaluate ecosystems functions and functioning more precisely.
> > This could seem counterintuitive to have more precise things when we would
> > use fuzzy methods but this is a reality (for example, many methods in
> > medical imaging are using fuzzy mathematics and statistics to give very
> > precise images of human body).
> >         Maybe, we could say that we don't need to measure things and
> > ecosystems
> > processes would be no exception. But, I think that quantification is a
> > second need (after classification) for human being. And this not only
> > encompass a philosophical thought but also a very practical one. Indeed,
> > we can still go walking in a forest evaluating roughly what is happening
> > and be satisfied with this point of view. But, our understanding of
> > ecosystems functioning is not just a hobby. This have some important
> > consequences on our possibilities to match human activities and Nature's
> > preservation. Having good measures of ecosystem functioning would allow us
> > to know what are the crucial leverages in ecosystems we can rely on to
> > enhance ecosystems quality. This is particularly true in human-impacted
> > systems.
> >
> >
> > Nicolas
> >
> > Le Sun, 30 Sep 2012 14:28:00 +0200, Ted Mosquin <[email protected]> a
> > écrit:
> >
> >
> >  Hello all,
> >>
> >> Here is the way I understand the meaning of 'functional diversity'.  No
> >> endless statistics or fuzzy math required to muddy the explanation even
> >> more.   The essential question is: what do organisms (individually and
> >> collectively) actually do within their ecosystems to enable the world to
> >> have become the way it is?  Let me count the ways.......(Table 3 in the URL
> >> below).  We humans find ourselves living in a great big never-ending self
> >> organizing buzz out there no matter where one goes on this planet. The buzz
> >> has been going on since the beginning of time. One has to try to bear in
> >> mind that we are processes, that is we are verbs and not nouns (except in
> >> micro-moments in time). This is an alternative to fuzzy math and stats --
> >> just go out there, take a deep breath and be the participant that you are.
> >>
> >> http://www.ecospherics.net/**pages/MosqEcoFun5.html<http://www.ecospherics.net/pages/MosqEcoFun5.html>
> >>
> >> Ted Mosquin
> >>
> >>
> >> On 9/29/2012 9:30 AM, Nicolas PERU wrote:
> >>
> >>> I'm also a proponent of the application of fuzzy thinking and fuzzy set
> >>> mathematics to ecology. Clearly, binary thinking should be avoided in
> >>> ecology because very little (none ?) ecosytems parts obey black/white 
> >>> rules
> >>> like human beings like to apply on anything. Classifications are a
> >>> necessity for human being but not for natural elements. I think that if we
> >>> really want to evaluate ecosystem functioning we must recognize and take
> >>> into account in our mathematical measures the fuzziness of Nature. Binary
> >>> categorization (like some biological traits) should be applied at the end
> >>> of our calculus processes.
> >>>
> >>> Nicolas
> >>>
> >>>
> >>> Le Sat, 29 Sep 2012 06:55:58 +0200, Wayne Tyson <[email protected]> a
> >>> écrit:
> >>>
> >>>  I tend to be even fuzzier-- Fuzzy Philosophy: A Foundation for
> >>>> Interneted Ecology? This became my retirement talk at the SERCAL annual
> >>>> meeting.
> >>>>
> >>>> WT
> >>>>
> >>>>
> >>>> ----- Original Message -----
> >>>> From: "Nicolas PERU" <[email protected]>
> >>>> To: <[email protected]>
> >>>> Sent: Friday, September 28, 2012 12:57 AM
> >>>> Subject: Re: [ECOLOG-L] Visualizing functional diversity
> >>>>
> >>>>
> >>>> Dear Wayne,
> >>>>
> >>>> In my point of viewn, ecosystem functions directly refer to how energy
> >>>> flows are shaped through ecosystem and how they allow ecosystem to
> >>>> maintain by themselves (without human intervention this time). So, when
> >>>> we
> >>>> measure a functional diversity we try to evaluate the number of
> >>>> different
> >>>> ways a given energy flow can be realized. One aim is to link living
> >>>> communities diversities to ecosystem functioning (energy flow) and so
> >>>> define how organisms participate to the success of energy transfer.
> >>>>
> >>>> This is a quite fuzzy and very general definition but I hope this helps.
> >>>>
> >>>> Regards,
> >>>>
> >>>>
> >>>> Nicolas
> >>>>
> >>>>
> >>>> Le Fri, 28 Sep 2012 02:43:00 +0200, Wayne Tyson <[email protected]> a
> >>>> écrit:
> >>>>
> >>>>  Thanks, Juan; I do appreciate the reference, but I am looking for a
> >>>>> simper answer than that--a scientifically-based explanation of what
> >>>>> ecosystem function means as an actual or theoretical feature of actual
> >>>>> ecosystems. I am definitely not interested in ". . . an anthropocentric
> >>>>> concept (as humans depend on ecosystems to survive) because is
> >>>>> described
> >>>>> as the capacity of the natural processes to provide an array of direct
> >>>>> or indirect services or benefits to humans." I would be delighted to
> >>>>> hear a discussion of benefits to humans some other time, however, but I
> >>>>> do not want this discussion to wander off the central, very basic
> >>>>> question now.
> >>>>>
> >>>>> WT
> >>>>>
> >>>>>
> >>>>>   ----- Original Message -----
> >>>>>   From: Juan Alvez
> >>>>>   To: Wayne Tyson
> >>>>>   Cc: [email protected]
> >>>>>   Sent: Thursday, September 27, 2012 10:25 AM
> >>>>>   Subject: Re: [ECOLOG-L] Visualizing functional diversity
> >>>>>
> >>>>>
> >>>>>   Hi Wayne,
> >>>>>
> >>>>>   You can best visualize ecosystem functions in a paper written 10
> >>>>> years
> >>>>> ago by De Groot and others,
> >>>>>   (Ref: de Groot, R.S., Wilson, M.A., Boumans, R.M.J., 2002. A typology
> >>>>> for the classification, description and valuation of ecosystem
> >>>>> functions, goods and services. Ecological Economics 41, 393-408.).
> >>>>>   It describes four main ecosystem functions (regulation [climate,
> >>>>> nutrient cycling, polination], habitat [refugia, nursery, etc.],
> >>>>> information [scientific info, recreation, cultural and aesthetic] and
> >>>>> production [food, genetic and medicinal resources, raw materials, etc.]
> >>>>> functions).
> >>>>>   It is certainly an anthropocentric concept (as humans depend on
> >>>>> ecosystems to survive) because is described as the capacity of the
> >>>>> natural processes to provide an array of direct or indirect services or
> >>>>> benefits to humans.
> >>>>>
> >>>>>   Best,
> >>>>>   Juan
> >>>>>
> >>>>>
> >>>>>   On 9/26/2012 10:11 PM, Wayne Tyson wrote:
> >>>>>
> >>>>>     Please describe function in ecosystems.
> >>>>>
> >>>>>     WT
> >>>>>
> >>>>>     ----- Original Message ----- From: "Katharine Miller"
> >>>>> <[email protected]>
> >>>>>     To: <[email protected]>
> >>>>>     Sent: Wednesday, September 26, 2012 4:07 PM
> >>>>>     Subject: [ECOLOG-L] Visualizing functional diversity
> >>>>>
> >>>>>
> >>>>>     Hello,
> >>>>>
> >>>>>     I have used Rao's quadratic entropy to evaluate functional
> >>>>> diversity
> >>>>> between
> >>>>>     a number of estuaries for which I also have a GIS database.  I
> >>>>> would
> >>>>> like to
> >>>>>     be able to visualize which sites are more functionally similar
> >>>>> across the
> >>>>>     region to evaluate patterns in dispersal, etc.
> >>>>>
> >>>>>     I know it is possible to use the pairwise functional beta diversity
> >>>>> values
> >>>>>     as a distance matrix in a Mantel test or multivariate regression on
> >>>>>     distances matrices (MRM) when comparing functional diversity to,
> >>>>> for
> >>>>>     example, environmental data.  Would it also be appropriate to use
> >>>>> these
> >>>>>     values in a PAM or other clustering method to identify estuaries
> >>>>> that are
> >>>>>     more/less similar in functional diversity?
> >>>>>
> >>>>>     This is likely to sound like a very naive question, but I have done
> >>>>> an
> >>>>>     extensive literature search and have not found where this has been
> >>>>> done
> >>>>>     before  - perhaps because it is a bad idea for other reasons?
> >>>>>
> >>>>>     Any insights and/or references on this approach would be greatly
> >>>>> appreciated.
> >>>>>
> >>>>>     Thank you
> >>>>>
> >>>>>
> >>>>>     -----
> >>>>>     No virus found in this message.
> >>>>>     Checked by AVG - www.avg.com
> >>>>>     Version: 10.0.1427 / Virus Database: 2441/5293 - Release Date:
> >>>>> 09/26/12
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>
> >>>>
> >>>
> >>>
> >>
> >
> > --
> > Nicolas PERU, PhD
> > 33-(0)4 72 43 28 94
> > 06-88-15-23-10
> > CNRS, UMR 5023 - LEHNA
> > Université Claude Bernard - Lyon 1
> > 43 Bld du 11 novembre 1918
> > Rdc Bât Forel
> > 69622 VILLEURBANNE cedex FRANCE
> >

--
David McNeely

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