Hi Antoine,

Thanks. Were I in a position to hand out "grades" I would give you an "A".

I look forward to learning more about the subject through your work. It seems a worthy subject for discussion here, but not everyone agrees (none, however, has simply defined it).

I would hope that those on this list with superior intellect, experience, and education will contribute their insights. I imagine that if we are patient and they are willing, they will make us aware of their knowledge.

WT


----- Original Message ----- From: "Antoine C.-Dussault" <[email protected]>
To: <[email protected]>
Sent: Friday, September 28, 2012 12:43 PM
Subject: Re: [ECOLOG-L] [ECOLO G-L] Ecosy stem funct ion defini tion Re: [ ECOLOG-L] Visualizin g function al diversi ty‏


Hi Wayne,

I've been interested in the meaning of "function" in
ecology for a couple of years and the most exhaustive and synthetic
attempt to define the multiple meanings of the term as it features in
the ecology literature are by Kurt Jax. You may want to have a look at :


Jax 2005 "Function and “functioning” in ecology: what does it mean?" in Oikos, Volume 111, Issue 3, pages 641–648, December 2005
Jax 2010 Ecosystem Functioning, Cambridge University Press.

This
is work that I could call philosophical but by a ecological scientist.
I'm myself doing some work on the topic as a PHD student in philosophy
of ecology, so I would appreciate any suggestion of reading on the
topic.

Hope Jax helps!

Best,

Antoine


Date: Fri, 28 Sep 2012 07:50:32 -0700
From: [email protected]
Subject: [ECOLOG-L] Ecosystem function definition Re: [ECOLOG-L] Visualizing functional diversity
To: [email protected]

Ling and Ecolog:

It seems to me that before one moves into method, one should understand the question first, and I make no claim to being able to do so. When you say "I
have done an extensive literature search and have not found where this has
been done before . . . " were you referring to a definition of ecosystem
function or to the methodology?

I remember well a conversation with Dick Vogl years ago when I blithely used
the term "ecosystem function." Dick said "I'm not sure that anybody knows
what ecosystem function is." Vogl had a way of stimulating one's thinking
with stuff like that. I do have some vague ideas about what ecosystem
function is, but I have never brought it all together, so I thought maybe
you had, or knew of someone who had, as you seemed to be using the term at
least as confidently as I did when Vogl made his statement.

My thoughts about ecosystem function are still at the question phase and yet
consist of an assemblage of "stuff" like Juan mentioned rather than a
complete explanation of the phenomenon. "Functional diversity" is to me a
yet more mysterious concept which I would have to come to understand before
venturing forth any ideas about methodology, and certainly would have no
clue about the relative usefulness of one method or set of methods over the
other.

It does, however, seem sensible to me that almost any kind of comparative
analysis of similar ecosystem subsets like estuaries would be useful, even
if it would not, in of itself, get at causality, for example, as it would at
least pave the way toward further analysis.

This is the sort of question that I think might be helped by the proposal I
have submitted to the Smithsonian Encyclopedia of Life program and kindly
posted by one of the staff. Briefly, that proposal is to begin to gather
data on organisms' ranges of requirements and limitations.

I hope someone can lead me to whoever may have defined ecosystem function in
a comprehensive, scientific way that is widely accepted by the discipline.

WT


----- Original Message ----- From: "ling huang" <[email protected]>
To: <[email protected]>
Sent: Thursday, September 27, 2012 8:52 PM
Subject: Re: [ECOLOG-L] Visualizing functional diversity


Hi

No (sorry Wayne I was not clear) my response was not to the 'Please describe
function in ecosystems.question,' but about the 'but I have done an
extensive literature search and have not found where this has been done
before - perhaps because it is a bad idea for other reasons?' and 'Would it also be appropriate to use these values in a PAM or other clustering method
to identify estuaries that are more/less similar in functional diversity?'

I am suggesting to make use of some stat software such as SAS or SYSTAT and
do a multivariate cluster analysis on the variables (functional diversity
variables on hand) for the statistical grouping of like estuaries. These
variables may well include a subset of those mentioned by Juan; namely
'(regulation [climate,
nutrient cycling, pollination], habitat [refugia, nursery, etc.],
information [scientific info, recreation, cultural and aesthetic] and
production [food, genetic and medicinal resources, raw materials, etc.]
functions)'.

Best wishes,
Ling
Ling Huang
Sacramento City College

Thanks, Juan; I do appreciate the reference, but I am looking for a
simper answer than that--a scientifically-based explanation of what
ecosystem function means as an actual or theoretical feature of actual
ecosystems. I am definitely not interested in ". . . an anthropocentric
concept (as humans depend on ecosystems to survive) because is described
 as the capacity of the natural processes to provide an array of direct
or indirect services or benefits to humans." I would be delighted to
hear a discussion of benefits to humans some other time, however, but I
do not want this discussion to wander off the central, very basic
question now.

WT


----- Original Message ----- From: Juan Alvez
To: Wayne Tyson
Cc: [email protected]
Sent: Thursday, September 27, 2012 10:25 AM
Subject: Re: [ECOLOG-L] Visualizing functional diversity


Hi Wayne,

You can best visualize ecosystem functions in a paper written 10 years ago
by De Groot and others,

 (Ref: de Groot, R.S., Wilson, M.A., Boumans, R.M.J., 2002. A typology
for the classification, description and valuation of ecosystem
functions, goods and services. Ecological Economics 41, 393-408.).

 It describes four main ecosystem functions (regulation [climate,
nutrient cycling, polination], habitat [refugia, nursery, etc.],
information [scientific info, recreation, cultural and aesthetic] and
production [food, genetic and medicinal resources, raw materials, etc.]
functions).
It is certainly an anthropocentric concept (as humans
depend on ecosystems to survive) because is described as the capacity of
 the natural processes to provide an array of direct or indirect
services or benefits to humans.

Best,
Juan


--- On Thu, 9/27/12, Wayne Tyson <[email protected]> wrote:

From: Wayne Tyson <[email protected]>
Subject: Re: [ECOLOG-L] Visualizing functional diversity
To: "ling huang" <[email protected]>, [email protected]
Date: Thursday, September 27, 2012, 5:34 PM

Ling and Ecolog:

No, I'm not. I'm looking for just what I asked. I would like your (or
anybody's) explanation of what you mean by ecosystem function--in plain
language.

I presume that that would be very easy to do. I kept my question simple in
the hopes of getting such an answer, but I would welcome an explanation of
"functional diversity" too.

WT

----- Original Message ----- From: "ling huang" <[email protected]>
To: <[email protected]>
Sent: Thursday, September 27, 2012 1:15 PM
Subject: [ECOLOG-L] Visualizing functional diversity


It sounds as though you are looking to do a cluster analysis for statistical
grouping of like estuaries. This method is outlined in virtually all
multivariate analysis books. PROC CLUSTER is the SAS procedure.

Best

Ling
Ling Huang
Sacramento City College

--- On Wed, 9/26/12, Wayne Tyson <[email protected]> wrote:

From: Wayne Tyson <[email protected]>
Subject: Re: [ECOLOG-L] Visualizing functional diversity
To: [email protected]
Date: Wednesday, September 26, 2012, 7:11 PM

Please describe function in ecosystems.

WT

----- Original Message ----- From: "Katharine Miller" <[email protected]>
To: <[email protected]>
Sent: Wednesday, September 26, 2012 4:07 PM
Subject: [ECOLOG-L] Visualizing functional diversity


Hello,

I have used Rao's quadratic entropy to evaluate functional diversity between a number of estuaries for which I also have a GIS database. I would like to
be able to visualize which sites are more functionally similar across the
region to evaluate patterns in dispersal, etc.

I know it is possible to use the pairwise functional beta diversity values
as a distance matrix in a Mantel test or multivariate regression on
distances matrices (MRM) when comparing functional diversity to, for
example, environmental data. Would it also be appropriate to use these
values in a PAM or other clustering method to identify estuaries that are
more/less similar in functional diversity?

This is likely to sound like a very naive question, but I have done an
extensive literature search and have not found where this has been done
before - perhaps because it is a bad idea for other reasons?

Any insights and/or references on this approach would be greatly
appreciated.

Thank you


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