This kind of question is far more suitable for the r-sig-ecology email
list than for ECOLOG. For one thing, the authors of vegan regularly
answer questions there.
https://stat.ethz.ch/mailman/listinfo/r-sig-ecology
Also, to be able to answer your question we need to know more about what
your data look like - str(yourdata) - being a good start, and what
commands you're using.
Sarah
On 12/09/2011 12:04 PM, Bill Sutton wrote:
Hello all,
I have a quick question regarding data format when using the vegan package
in program R for rarefaction. I have played around a bit with the sample
data links and can get these to run fine, but I am having a problem
getting my own data to load properly. When I try to run the rarefaction
command, I get this message, "Error in as.matrix(x) : object 'x' not
found." Not sure if this error is due to the way I am setting up my data
or the pathway to my dataset. Could someone weigh in and let me know what
I am doing incorrectly? Any input on data format would be great. Thanks
in advance for any help.
Bill
--
Dr. Sarah Goslee
USDA-ARS Pasture Systems and Watershed Management Research Unit
Adjunct Associate Professor, Crop and Soil Sciences Department
Penn State
Building 3702, Curtin Road
University Park, PA 16802
Phone: 814-863-0887
Fax: 814-863-0935
[email protected]
