John,
 
 Don made a very good suggestion in his reply: you can calculate the mean 
number of days for a species to reach a particular phenological stage, 
thereby making "day" the response variable.
  My point is that it sometimes makes sense to treat ordinal data the same 
way you treat continuous data (although a lot of the time it does not) and 
I would not rule it out without at least considering it.  The trick is to 
determine the "spacing" between categories.  Is a class 2 one unit greater 
than a class 1 and a class 4 three units greater?  If you take this 
approach, you need to make your rationale clear when you're reporting your 
results.

Cheers,
Peter 

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