Hi Roberto, Roberto Scipioni <[email protected]> writes:
> Hi, > > I am trying the installation you recommended. It is taking forever > 10 hours > ! > Did you experince the same? Yes. It tool over 22 hours on our system (using 8 cores). 137 modules in total are needed and individual ones, such as Bazel, if I remember correctly, take ages by themselves. As you wrote on Friday, I assume that by now, Monday, the installation may have finished :-) Cheers, Loris > Kind regards > Roberto > > Il mercoledì 11 ottobre 2023 15:55:39 GMT+1, Loris Bennett > <[email protected]> ha scritto: > > Ciao Roberto, > > Roberto Scipioni <[email protected]> writes: > >> Dear Sir or Madam, >> >> I have been trying to install alphafold using Easybuild on Centos 7/8 >> using eb 4.5 4.6 4.8.1 using different Toolchains, different >> architectures, ....etc to no avail >> >> It stops systematically at Tensorflow/Bazel installation and/or in >> some cases when attempting to install Alphafold at the repo section >> giving errors about incomplete downloads / wrong EOF etc. >> >> I wonder whether anybody could give me any pointer on how to proceed. >> Honestly I am not sure where to start ...:-( > > Recently I have used the following successfully > > eb AlphaFold-2.3.1-foss-2022a-CUDA-11.7.0.eb --robot > --cuda-compute-capabilities=6.1,7.5 --buildpath=/dev/shm > --tmpdir=/scratch/eb-build > > Using /dev/shm as the build path should accelerate the build, assuming > you have enough memory. We change the tmpdir to prevent /tmp on the > node where the build job runs from filling up, as other jobs may also be > writing to there. > > HTH > > Loris -- Dr. Loris Bennett (Herr/Mr) ZEDAT, Freie Universität Berlin
