Hi,
anyone?
El vie, 3 dic 2021 a las 9:41, Arnau (<[email protected]>) escribió:
> Hi all,
>
> I was installing MACS3 using PythonBundle.My understanding is that a
> bundle is just a list of packages on some order so they all know about each
> other.
>
> MACS3 needs 3 packages to be installed: Cython, numpy, cykhash, in this
> order, so I created something like:
>
> [...]
>
> exts_list = [
> ('Cython','0.29.24',{
> }),
> ('numpy', '1.21.3', {
> 'sources': ['%(name)s-%(version)s.zip'],
> 'patches': [
> 'numpy-1.18.2-mkl.patch',
> 'numpy-1.20.3_disable-broken-override-test.patch',
> 'numpy-1.20.3_disable_fortran_callback_test.patch',
> ],
> }),
> ('cykhash', '2.0.0', {
> }),
> ('MACS3', '3.0.0a6', {
> 'modulename' : 'MACS3'
> }),
> ]
>
> [...]
>
> The first 3 installed successfully but MACS3 failed to install because it
> was not finding cykhash:
>
> ERROR: Could not find a version that satisfies the requirement
> cykhash>=1.0.2 (from macs3) (from versions: none)
> ERROR: No matching distribution found for cykhash>=1.0.2
>
>
> it was, mainly, because of the ignore-installed option from the pip
> installation:
>
> pip install
> --prefix=/home/bria/easybuildinstall/software/MACS3/3.0.0a6-foss-2021a
> --ignore-installed --no-index --no-build-isolation ."
>
> So I had to pass the "pip_ignore_installed = False" option and then MACS3
> was able to find cykhash...
>
>
> I find this a bit weird as, as said a the beginning, my understanding of
> the bundle is: "a list of python packages installed in a way that each
> knows about the others (and that's why order matters)."
>
> Am I wrong with my understanding on how the pythonbundle works?
>
> (I have other questions, but I guess that all depeden on this one :-) )
>
> TIA,
> Arnau
>
>
>
