Hi Kenneth, Kenneth Hoste <[email protected]> writes:
> Hi Loris, > > On 22/01/2020 17:16, Loris Bennett wrote: >> Hi Sam, >> >> Sam Moors <[email protected]> writes: >> >>> Hi Loris, >>> I suspect it's due to the './' in front of your files. >>> You should add the path relative to the installation dir. >>> If the file is in the installation dir, just remove the './'. >>> If the file is in lib/ then add 'lib/' in front of the file. >>> >>> Does this help? >> >> Unfortunately not. I did originally have >> >> sanity_check_paths = { >> 'files': ['voreentool', 'libvoreen_core.so'], >> 'dirs': ['resource'], >> } >> >> and got the same error. Because the files are usually in 'bin' >> or something, I thought rather speculatively that maybe file names >> without a directory were being misinterpreted, so that's why I added the >> './'. That is obviously not an absolute path, so the error must be >> coming from somewhere else. > > Can you share the full easyconfig file you are using for this, so we can try > and > reproduce the issue? > > The error is a bit cryptic, it could/should tell for which environment > variable > this is, which would make it easier to pinpoint the problem... It was nothing to do with 'sanity_check_paths'. I had modextrapaths = {'PATH': '%(installdir)s'} instead of modextrapaths = {'PATH': '.'} Sorry for the noise. Cheers, Loris > > > regards, > > Kenneth > >> >> Cheers, >> >> Loris >> >>> Sam >>> >>> >>> On Wed, Jan 22, 2020 at 4:12 PM Loris Bennett <[email protected]> >>> wrote: >>> >>> Hi, >>> >>> I am trying to build a package, but am failing at the sanity check >>> stage: >>> >>> == 2020-01-22 16:03:20,211 build_log.py:169 ERROR EasyBuild crashed >>> with an error (at >>> easybuild/software/EasyBuild/4.1.1/lib/python2.7/site-packages/easybuild/base/exceptions.py:124 >>> in __init__): >>> Absolute path >>> /trinity/shared/easybuild/software/voreen/5.1.1-foss-2018b-Python-3.6.6 >>> passed to update_paths which only expects relative paths. (at >>> >>> easybuild/software/EasyBuild/4.1.1/lib/python2.7/site-packages/easybuild/tools/module_generator.py:1325 >>> in update_paths) >>> == 2020-01-22 16:03:20,211 easyblock.py:2557 WARNING Sanity check: >>> loading fake module failed: 'Absolute path >>> /trinity/shared/easybuild/software/voreen/5.1.1-foss-2018b-Python-3.6.6 >>> passed to >>> update_paths which only expects relative paths.' >>> == 2020-01-22 16:03:20,211 build_log.py:169 ERROR EasyBuild crashed >>> with an error (at >>> easybuild/software/EasyBuild/4.1.1/lib/python2.7/site-packages/easybuild/base/exceptions.py:124 >>> in __init__): Sanity >>> check failed: loading fake module failed: 'Absolute path >>> /trinity/shared/easybuild/software/voreen/5.1.1-foss-2018b-Python-3.6.6 >>> passed to update_paths which only expects relative paths.' (at >>> >>> easybuild/software/EasyBuild/4.1.1/lib/python2.7/site-packages/easybuild/framework/easyblock.py:2596 >>> in _sanity_check_step) >>> == 2020-01-22 16:03:20,212 easyblock.py:3109 WARNING build failed >>> (first 300 chars): Sanity check failed: loading fake module failed: >>> 'Absolute path >>> /trinity/shared/easybuild/software/voreen/5.1.1-foss-2018b-Python-3.6.6 >>> passed to update_paths which only expects relative paths.' >>> >>> In my EC I have: >>> >>> sanity_check_paths = { >>> 'files': ['./voreentool', './libvoreen_core.so'], >>> 'dirs': ['resource'], >>> } >>> >>> What am I doing wrong and how can I rerun EB skipping everything before >>> the sanity check stage? >>> >>> Cheers, >>> >>> Loris >>> >>> -- >>> Dr. Loris Bennett (Mr.) >>> ZEDAT, Freie Universität Berlin Email [email protected] >>> > -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
