You should nbot set --with-pmi to anything when /usr is the base, just use --with-pmi and stuff will find the include files correctly, or at least should
On 11/14/19 11:53 AM, Alan O'Cais wrote: > Looks to me like you should be using: > --with-pmi=/usr > It needs to find the headers and the libraries. > > On Thu, 14 Nov 2019 at 11:49, Loris Bennett <[email protected] > <mailto:[email protected]>> wrote: > > Loris Bennett <[email protected] > <mailto:[email protected]>> writes: > > > Hi, > > > > When installing > > > > OpenMPI-2.1.0-GCC-6.3.0-2.28.eb > > > > on a machine with > > > > Slurm 19.05.3-2 > > > > I get the following error: > > > > checking if user requested PMI support... yes > > checking for pmi.h in /usr/include/slurm/include... not found > > checking for pmi.h in /usr/include/slurm/include/slurm... not found > > checking for libpmi in /usr/lib64... found > > checking for PMI_Init in -lpmi... yes > > checking for pmi2.h in /usr/include/slurm/include... not found > > checking for pmi2.h in /usr/include/slurm/include/slurm... not found > > checking for libpmi2 in /usr/lib64... found > > checking for PMI2_Init in -lpmi2... yes > > checking can PMI support be built... no > > configure: WARNING: PMI support requested (via --with-pmi) but > neither pmi.h > > configure: WARNING: nor pmi2.h were found under locations: > > configure: WARNING: /usr/include/slurm > > configure: WARNING: /usr/include/slurm/slurm > > configure: WARNING: Specified path: /usr/include/slurm > > configure: WARNING: OR neither libpmi nor libpmi2 were found under: > > configure: WARNING: /usr/lib64/lib > > configure: WARNING: /usr/lib64/lib64 > > configure: WARNING: Specified path: /usr/lib64 > > configure: error: Aborting > > > > Slurm was installed from the sources and on my system the PMI headers > > are at > > > > /usr/include/pmi.h > > /usr/include/slurm/pmi.h > > /usr/include/pmi2.h > > /usr/include/slurm/pmi2.h > > > > Is the configure looking in the wrong place or were the PMI > headers in a > > different place in previous versions of Slurm? > > So, config.log says: > > This file contains any messages produced by compilers while > running configure, to aid debugging if configure makes a mistake. > > It was created by Open MPI configure 2.1.0, which was > generated by GNU Autoconf 2.69. Invocation command line was > > $ ./configure > --prefix=/trinity/shared/easybuild/software/OpenMPI/2.1.0-GCC-6.3.0-2.28 > --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu > --enable-shared --enable-mpi-thread-multiple --with-verbs > --enable-mpirun-prefix-by-default > > --with-hwloc=/trinity/shared/easybuild/software/hwloc/1.11.6-GCC-6.3.0-2.28 > --without-ucx --with-slurm --with-pmi=/usr/include/slurm > --with-pmi-libdir=/usr/lib64 > > So while > > --with-pmi=/usr/include/slurm > > is given, which is indeed the directory containing the header files. > However, configure doesn't look into this directory but instead > looks at > the for the non-existent 'include' and 'include/slurm' subdirectories: > > configure:80629: result: yes > configure:80664: checking for pmi.h in /usr/include/slurm/include > configure:80671: result: not found > configure:80673: checking for pmi.h in > /usr/include/slurm/include/slurm > > configure:80925: checking for pmi2.h in /usr/include/slurm/include > configure:80932: result: not found > configure:80934: checking for pmi2.h in > /usr/include/slurm/include/slurm > configure:80942: result: not found > > The problem seems to be that the OpemMPI 'configure' incorrectly adds > 'include' and 'include/slurm' to the variable $check_pmi_install_dir. > > So is this version of OpenMPI just broken, as far as configure goes? > > Can anyone confirm? > > Cheers, > > Loris > > -- > Dr. Loris Bennett (Mr.) > ZEDAT, Freie Universität Berlin Email > [email protected] <mailto:[email protected]> > > > > -- > Dr. Alan O'Cais > E-CAM Software Manager > Juelich Supercomputing Centre > Forschungszentrum Juelich GmbH > 52425 Juelich, Germany > > Phone: +49 2461 61 5213 > Fax: +49 2461 61 6656 > E-mail: [email protected] <mailto:[email protected]> > WWW: http://www.fz-juelich.de/ias/jsc/EN > > > ------------------------------------------------------------------------------------------------ > ------------------------------------------------------------------------------------------------ > Forschungszentrum Juelich GmbH > 52425 Juelich > Sitz der Gesellschaft: Juelich > Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 > Vorsitzender des Aufsichtsrats: MinDir Volker Rieke > Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), > Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, > Prof. Dr. Sebastian M. Schmidt > ------------------------------------------------------------------------------------------------ > ------------------------------------------------------------------------------------------------ > -- Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden Internet: [email protected] Phone: +46 90 7866134 Fax: +46 90-580 14 Mobile: +46 70 7716134 WWW: http://www.hpc2n.umu.se
