Howdy John,
You might consider posting the EasyConfig.eb. Not sure if that
is a simple syntax error or not.
jack
On 04/16/2018 01:26 PM, Dey, John F wrote:
EasyBuild error. Package seems to build and test ok. Easybuild fails
during package install
Easyconfig: https://github.com/FredHutch/easybuild-life-sciences
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-> fh_easyconfigs -> NiftyNet-0.2.2-foss-2016b-Python-3.6.5-fh1.eb
EasyBuild Version : This is EasyBuild 3.5.3 (framework: 3.5.3,
easyblocks: 3.5.3)
== 2018-04-16 11:12:49,498 easyblock.py:2449 INFO Starting build step
== 2018-04-16 11:12:49,499 easyblock.py:2455 INFO Running method
build_step part of step build
== 2018-04-16 11:12:49,499 build_log.py:233 INFO testing...
== 2018-04-16 11:12:49,500 easyblock.py:2449 INFO Starting test step
== 2018-04-16 11:12:49,500 easyblock.py:2455 INFO Running method
test_step part of step test
== 2018-04-16 11:12:49,501 build_log.py:233 INFO installing...
== 2018-04-16 11:12:49,501 easyblock.py:2449 INFO Starting install step
== 2018-04-16 11:12:49,502 easyblock.py:2455 INFO Running method
stage_install_step part of step install
== 2018-04-16 11:12:49,502 easyblock.py:2455 INFO Running method
make_installdir part of step install
== 2018-04-16 11:12:49,502 easyblock.py:881 INFO Found old directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
== 2018-04-16 11:12:49,543 filetools.py:1203 INFO Path
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
successfully removed.
== 2018-04-16 11:12:49,543 easyblock.py:888 INFO Removed old directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
== 2018-04-16 11:12:49,544 filetools.py:1107 INFO Creating directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
(parents: True, set_gid: False, sticky: False)
== 2018-04-16 11:12:49,545 easyblock.py:2455 INFO Running method
install_step part of step install
== 2018-04-16 11:12:49,546 filetools.py:1107 INFO Creating directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1/lib/python3.6/site-packages
(parents: True, set_gid: False, sticky: False)
== 2018-04-16 11:12:49,549 environment.py:97 INFO Environment variable
PYTHONPATH set to
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1/lib/python3.6/site-packages
(previously undefined)
== 2018-04-16 11:12:49,549 run.py:183 INFO running cmd: pip --version
== 2018-04-16 11:12:54,427 pythonpackage.py:331 INFO Found pip version
10.0.0, OK
== 2018-04-16 11:12:54,592 build_log.py:158 ERROR EasyBuild crashed
with an error (at
easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): Traceback (most recent call last):
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/main.py",
line 128, in build_and_install_software
(ec_res['success'], app_log, err) = build_and_install_one(ec,
init_env, hooks=hooks)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py",
line 2684, in build_and_install_one
result = app.run_all_steps(run_test_cases=run_test_cases)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py",
line 2600, in run_all_steps
self.run_step(step_name, step_methods)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py",
line 2475, in run_step
step_method(self)()
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_easyblocks-3.5.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py",
line 480, in install_step
cmd = self.compose_install_command(self.installdir)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_easyblocks-3.5.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py",
line 352, in compose_install_command
loc = self.src[0]['path']
IndexError: list index out of range
(at
easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/main.py:161
in build_and_install_software)
-- **
*John Dey*
*HPC Operations*
Scientific Computing
*O* _206.667.4308 <tel:%28206%29%20667-4308>_
*M* _360.649.2731 <tel:%28360%29%20649-2731>_
*E* [email protected] <mailto:[email protected]>
*Fred Hutchinson Cancer Research Center*
1100 Fairview Ave. N
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