Hi Dan On 27 March 2013 11:17, Daniel Bridges <[email protected]> wrote: > Thanks for the explanations Lars. Will check data integrity when I get the > server up and running. If the 404 error isn't related then guess my tomcat > server isn't running properly? > > Guess I am doing something stupid, but can't see what it is. When I run the > startup script and look at the logs in catalina.out I get the following: > > Mar 27, 2013 1:12:23 PM org.apache.catalina.startup.Catalina load > INFO: Initialization processed in 601 ms > Mar 27, 2013 1:12:23 PM org.apache.catalina.core.StandardService > startInternal > INFO: Starting service Catalina > Mar 27, 2013 1:12:23 PM org.apache.catalina.core.StandardEngine > startInternal > INFO: Starting Servlet Engine: Apache Tomcat/7.0.26 > Mar 27, 2013 1:12:23 PM org.apache.catalina.startup.HostConfig deployWAR > INFO: Deploying web application archive /home/dhis/tomcat/webapps/ROOT.war > Mar 27, 2013 1:12:24 PM org.apache.catalina.loader.WebappClassLoader > validateJarFile > INFO: > validateJarFile(/home/dhis/tomcat/webapps/ROOT/WEB-INF/lib/geronimo-servlet_2.5_spec-1.1.2.jar) > - jar not loaded. See Servlet Spec 2.3, section 9.7.2. Offending class: > javax/servlet/Servlet.class > * INFO 2013-03-27 13:12:30,869 System property dhis2.home not set > (DefaultLocationManager.java [pool-2-thread-1]) > * INFO 2013-03-27 13:12:30,873 Environment variable DHIS2_HOME points to > /home/dhis/dhis_home (DefaultLocationManager.java [pool-2-thread-1]) > * INFO 2013-03-27 13:12:49,219 Found the following message senders: > [org.hisp.dhis.message.EmailMessageSender@cccda4] > (DefaultMessageService.java [pool-2-thread-1]) > * INFO 2013-03-27 13:12:54,797 Scheduled task with key: 0 0 0 ? * 1-6 and > cron: 0 0 0 ? * 1-6 (SpringScheduler.java [pool-2-thread-1]) > * INFO 2013-03-27 13:12:54,801 Scheduled task with key: 0 0 0 ? * 0 and > cron: 0 0 0 ? * 0 (SpringScheduler.java [pool-2-thread-1]) > * INFO 2013-03-27 13:12:57,979 Camel context started > (DHIS2LifecycleStrategy.java [pool-2-thread-1]) > * INFO 2013-03-27 13:12:57,980 Searching for routes in directory: > /home/dhis/dhis_home/routes (DHIS2LifecycleStrategy.java [pool-2-thread-1]) > * INFO 2013-03-27 13:12:58,499 Executing startup routine [1 of 10, runlevel > 1]: TableAlteror (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) > * INFO 2013-03-27 13:13:00,944 Tables updated (TableAlteror.java > [pool-2-thread-1]) > * INFO 2013-03-27 13:13:00,945 Executing startup routine [2 of 10, runlevel > 1]: MapViewUpgrader (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) > * INFO 2013-03-27 13:13:01,038 Executing startup routine [3 of 10, runlevel > 2]: IdentityPopulator (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) > * INFO 2013-03-27 13:13:01,297 Executing startup routine [4 of 10, runlevel > 2]: PeriodTypePopulator (DefaultStartupRoutineExecutor.java > [pool-2-thread-1]) > * INFO 2013-03-27 13:13:01,306 Executing startup routine [5 of 10, runlevel > 3]: TableCreator (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) > * INFO 2013-03-27 13:13:01,392 Executing startup routine [6 of 10, runlevel > 3]: DataElementDefaultDimensionPopulator (DefaultStartupRoutineExecutor.java > [pool-2-thread-1]) > * INFO 2013-03-27 13:13:01,557 Linked default category with default concept > (DataElementDefaultDimensionPopulator.java [pool-2-thread-1]) > * INFO 2013-03-27 13:13:01,965 Executing startup routine [7 of 10, runlevel > 4]: PatientTableAlteror (DefaultStartupRoutineExecutor.java > [pool-2-thread-1]) > * INFO 2013-03-27 13:13:02,352 Executing startup routine [8 of 10, runlevel > 5]: OrganisationUnitGroupSetPopulator (DefaultStartupRoutineExecutor.java > [pool-2-thread-1]) > * INFO 2013-03-27 13:13:02,361 Executing startup routine [9 of 10, runlevel > 5]: DataEntryFormUpgrader (DefaultStartupRoutineExecutor.java > [pool-2-thread-1]) > * INFO 2013-03-27 13:13:02,408 Upgraded custom case entry form identifiers: > 6 (DataEntryFormUpgrader.java [pool-2-thread-1]) > * INFO 2013-03-27 13:13:02,420 Executing startup routine [10 of 10, > runlevel 6]: ExpressionUpgrader (DefaultStartupRoutineExecutor.java > [pool-2-thread-1]) > * ERROR 2013-03-27 13:13:02,510 Failed to upgrade expression: ([66.4] * 1.0) > + ([191.4] * 1.0) (ExpressionUpgrader.java [pool-2-thread-1]) > * ERROR 2013-03-27 13:13:02,510 java.lang.NullPointerException > (ExpressionUpgrader.java [pool-2-thread-1]) > * INFO 2013-03-27 13:13:02,514 All startup routines done > (DefaultStartupRoutineExecutor.java [pool-2-thread-1]) > Mar 27, 2013 1:13:09 PM org.apache.coyote.AbstractProtocol start > INFO: Starting ProtocolHandler ["http-bio-8080"] > Mar 27, 2013 1:13:09 PM org.apache.catalina.startup.Catalina start > INFO: Server startup in 45441 ms > > When I run the shutdown script I get: > Using CATALINA_BASE: /home/dhis/tomcat > Using CATALINA_HOME: /usr/share/tomcat7 > Using CATALINA_TMPDIR: /home/dhis/tomcat/temp > Using JRE_HOME: /usr > Using CLASSPATH: > /usr/share/tomcat7/bin/bootstrap.jar:/usr/share/tomcat7/bin/tomcat-juli.jar > Using CATALINA_PID: /home/dhis/tomcat/work/test-tomcat.pid > Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory > validateFile > WARNING: Problem with directory [/var/lib/tomcat7/common/classes], exists: > [false], isDirectory: [false], canRead: [false] > Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory > validateFile > WARNING: Problem with directory [/var/lib/tomcat7/common], exists: [false], > isDirectory: [false], canRead: [false] > Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory > validateFile > WARNING: Problem with directory [/var/lib/tomcat7/server/classes], exists: > [false], isDirectory: [false], canRead: [false] > Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory > validateFile > WARNING: Problem with directory [/var/lib/tomcat7/server], exists: [false], > isDirectory: [false], canRead: [false] > Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory > validateFile > WARNING: Problem with directory [/var/lib/tomcat7/shared/classes], exists: > [false], isDirectory: [false], canRead: [false] > Mar 27, 2013 1:14:39 PM org.apache.catalina.startup.ClassLoaderFactory > validateFile > WARNING: Problem with directory [/var/lib/tomcat7/shared], exists: [false], > isDirectory: [false], canRead: [false]
These warnings are not serious. Have you used tomcat7-instance-create to set up the CATALINA_BASE? I think the catalina.properties has an excessive list of potential directories it might find things in, some of which don't actually exist. I suspect its a hangover from tomcat6. Bob > Hope this is something obvious.... > > Cheers > Dan > > > On 27/03/13 11:57, Lars Helge Øverland wrote: > > Hi Dan > > On Wed, Mar 27, 2013 at 7:41 AM, Daniel Bridges <[email protected]> > wrote: >> >> Congrats to the team for releasing version 2.11 - it looks great. > > > Thanks.. > >> >> >> I am trying to upgrade my local server (Ubuntu 12.04 LTS) to 2.11, but am >> struggling to get it working. First I upgraded the server to postgres 9.2. I >> then created a new database and restored the 2.11 demo data into the new >> database. Everything seemed to run fine, although when I start up tomcat I >> get these two errors in catalina.out: >> >> * ERROR 2013-03-27 08:24:39,596 Failed to upgrade expression: ([66.4] * >> 1.0) + ([191.4] * 1.0) (ExpressionUpgrader.java [pool-2-thread-1]) >> * ERROR 2013-03-27 08:24:39,597 java.lang.NullPointerException >> (ExpressionUpgrader.java [pool-2-thread-1]) > > > In 2.11 we are using UIDs for indicator and validation rules expressions. > This means that the upgrade routine failed for one of the expressions > because the formula was invalid. This is mostly often caused by an > identifier in the formula pointing to a non-existing data element or > category option combination. You can identify this by running "Data > integrity checks" in data admin module and look for invalid indicator / > validation rule formulas. > > I can see we could have given a more descriptive error message her. But the > system will ignore it and continue starting up. > >> >> When I try to login to the server I get a 404 error from nginx. Happy to >> give more info, but does anyone know what these errors could relate to and >> how to solve them. >> > > Would be good with some more info. The above issue should not be related. > >> >> I also noticed that the dhis2-demo.zip file is listed on the dhis2.org >> download page as 74Mb, but the file I downloaded is actually 103Mb in size. >> Which should it be? Are there any md5 / SHA1 checksums that I can check my >> download against? > > > I have corrected it now, the size should be 103 Mb. Will add checksums > later. > > Thanks for reporting. > > > Lars > > > > _______________________________________________ > Mailing list: https://launchpad.net/~dhis2-users > Post to : [email protected] > Unsubscribe : https://launchpad.net/~dhis2-users > More help : https://help.launchpad.net/ListHelp > _______________________________________________ Mailing list: https://launchpad.net/~dhis2-users Post to : [email protected] Unsubscribe : https://launchpad.net/~dhis2-users More help : https://help.launchpad.net/ListHelp
