[Dhis2-devs] Moving to 2.16

Timothy Harding Tue, 07 Oct 2014 16:41:50 -0700

Hello Developer's Group

I'm now working on migrating from 2.14 to 2.16 in our test environment and
the startup for tomcat is hanging on step 7. I've included some relevant
snippets of logs below and have attached the full logs:


   - stdout.txt = Standard out during importing the DHIS2 2.14 database,
   running the upgrade script, and starting tomcat)
   - catalina.out = The tomcat log for the latest attempt to start up 2.16

My Notes:
I can boot up 2.14 with the database dump without problem
I can boot up 2.16 with a *blank* database without problem (it creates the
live environment i.e. admin:district)
The problem occurs when I try to boot up 2.16 with the 2.14 database (after
I've run the 2.15 upgrade script found here:
http://www.dhis2.org/download/resources/sql/rename-patient-to-trackedentity.sql
)
It hangs at step 7 of 14 * INFO  2014-10-08 09:45:03,291 Executing startup
routine [7 of 14, runlevel 4]: TrackedEntityTableAlteror
(DefaultStartupRoutineExecutor.java [localhost-startStop-1])
The system, for having such meager hardware, is really snappy with both the
live version of 2.16, and our full production mirror of 2.14.
The com.hazelcast.util.HealthMonitor continues to function even after
the initialization process hangs at step 7 of 14 (as you can see in
catalina.out) Oct 08, 2014 10:36:58 AM com.hazelcast.util.HealthMonitor

Both Java and Postgres are using no cpu cycles after the hang, so it
doesn't *feel* like it is churning away at something:

  PID USER      PR  NI    VIRT    RES    SHR S  %CPU %MEM     TIME+ COMMAND
 1413 dhis      20   0 1895572 570840  16532 S   1.0 44.7   1:48.39 java
  906 postgres  20   0  523944  30260  28868 S   0.0  2.4   0:00.47 postgres
  908 postgres  20   0  524704  77648  75724 S   0.0  6.1   0:01.04 postgres
  909 postgres  20   0  524140   4304   2904 S   0.0  0.3   0:00.16 postgres
  910 postgres  20   0  524140  14056  12656 S   0.0  1.1   0:00.50 postgres
  911 postgres  20   0  524980   3068   1096 S   0.0  0.2   0:00.11 postgres
  912 postgres  20   0  103712   1984    352 S   0.0  0.2   0:00.71 postgres
 1432 postgres  20   0  526508   7656   4524 S   0.0  0.6   0:00.00 postgres
 1433 postgres  20   0  529308  14604   8948 S   0.0  1.1   0:00.22 postgres
 1434 postgres  20   0  536664  46672  32832 S   0.0  3.7   0:08.00 postgres
 1904 postgres  20   0  525372   5652   3204 S   0.0  0.4   0:00.00 postgres
 1906 postgres  20   0  525256   4860   2548 S   0.0  0.4   0:00.00 postgres
 1907 postgres  20   0  525256   4856   2540 S   0.0  0.4   0:00.00 postgres
 2114 postgres  20   0  525372   5600   3192 S   0.0  0.4   0:00.00 postgres
(there are a lot of postgres processes it seems like)

I saw some errors on startup but the notes for 2.16 says to expect a few
the first time. I also saw some errors when I ran the import and 2.15
upgrade script.
Database import (grep for errors)
ERROR:  must be owner of extension plpgsql

Upgrade script (grep for errors)
ERROR:  table "patientaggregatereportmembers" does not exist
ERROR:  table "patienttabularreportmembers" does not exist
ERROR:  table "patientregistrationform_attributes" does not exist
ERROR:  table "patientregistrationform_fixedattributes" does not exist
ERROR:  table "patientregistrationform_identifiertypes" does not exist
ERROR:  table "patientregistrationform_attributes" does not exist
ERROR:  table "patientmobilesetting" does not exist

Any ideas? Is there an upgrade script I've forgotten to run or maybe a
setting I've missed?

Timothy Harding
PeaceCorps Volunteer
Republic of Vanuatu
hardi...@gmail.com
+678 5955137

dhis@dhis216:~$ psql -d dhis2 < /media/sf_DHIS2Share/vanphis_post_import.sql
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dhis@dhis216:~$ psql -d dhis2 < 
/media/sf_DHIS2Share/rename-patient-to-trackedentity.sql
DROP TABLE
DROP TABLE
ERROR:  table "patientaggregatereportmembers" does not exist
DROP TABLE
DROP TABLE
ALTER TABLE
DROP TABLE
DROP TABLE
DROP TABLE
ERROR:  table "patienttabularreportmembers" does not exist
DROP TABLE
DROP TABLE
DROP TABLE
ALTER TABLE
DROP TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ERROR:  table "patientregistrationform_attributes" does not exist
ERROR:  table "patientregistrationform_fixedattributes" does not exist
ERROR:  table "patientregistrationform_identifiertypes" does not exist
ERROR:  table "patientregistrationform_attributes" does not exist
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ERROR:  table "patientmobilesetting" does not exist
dhis@dhis216:~$ ./tomcat-dhis/bin/startup.sh
Using CATALINA_BASE:   /home/dhis/tomcat-dhis
Using CATALINA_HOME:   /usr/share/tomcat7
Using CATALINA_TMPDIR: /home/dhis/tomcat-dhis/temp
Using JRE_HOME:        /usr/lib/jvm/java-7-openjdk-amd64
Using CLASSPATH:       
/usr/share/tomcat7/bin/bootstrap.jar:/usr/share/tomcat7/bin/tomcat-juli.jar
Tomcat started.
Tomcat started

catalina.out
Description: Binary data

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[Dhis2-devs] Moving to 2.16

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