Guys I found why. It is because generating organitstructure takes a long time. (Mytop monitored this query: INSERT INTO orgunitstructure ...)
The default transaction waiting time on MySQL is 50seconds. I increased this innodb_lock_wait_timeout to 600seconds and it runs. Please someone can help me. I am get a sensation that the DHIS community is abandoning MySQL support. Is it that true? Caveman On Sun, Jul 11, 2010 at 9:28 PM, Orvalho Augusto <orvaq...@gmail.com> wrote: > I did not have success. My logs are: > > =========================================================== > * ERROR 21:24:31,306 Error while executing action > (ExceptionInterceptor.java [http-8081-6]) > java.lang.RuntimeException: Failed to flush BatchHandler > at > org.amplecode.quick.batchhandler.AbstractBatchHandler.flush(AbstractBatchHandler.java:290) > at > org.hisp.dhis.resourcetable.DefaultResourceTableService.generateOrganisationUnitStructures(DefaultResourceTableService.java:196) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:616) > at > org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) > at > org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) > at > org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) > at > org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) > at > org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) > at > org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) > at $Proxy21.generateOrganisationUnitStructures(Unknown Source) > at > org.hisp.dhis.dataadmin.action.resourcetable.GenerateResourceTableAction.execute(GenerateResourceTableAction.java:114) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:616) > at > com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:440) > at > com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:279) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:242) > at > org.hisp.dhis.webportal.interceptor.XWorkPortalUserInterceptor.intercept(XWorkPortalUserInterceptor.java:82) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.webportal.interceptor.XWorkPortalModuleInterceptor.intercept(XWorkPortalModuleInterceptor.java:85) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.webportal.interceptor.XWorkPortalMenuInterceptor.intercept(XWorkPortalMenuInterceptor.java:91) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.webportal.interceptor.XWorkPortalParamsInterceptor.intercept(XWorkPortalParamsInterceptor.java:117) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.interceptor.StyleInterceptor.intercept(StyleInterceptor.java:89) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.interceptor.SystemSettingInterceptor.intercept(SystemSettingInterceptor.java:94) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.interceptor.DataDictionaryModeInterceptor.intercept(DataDictionaryModeInterceptor.java:109) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.interceptor.DisplayPropertyInterceptor.intercept(DisplayPropertyInterceptor.java:90) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.interceptor.SortOrderInterceptor.intercept(SortOrderInterceptor.java:124) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.security.intercept.XWorkSecurityInterceptor.intercept(XWorkSecurityInterceptor.java:98) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:141) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:126) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:195) > at > com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:148) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.hisp.dhis.interceptor.ExceptionInterceptor.intercept(ExceptionInterceptor.java:89) > at > com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236) > at > org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:52) > at > org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:468) > at > org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:395) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > at > org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:378) > at > org.hisp.dhis.security.filter.RequiredLoginFilter.doFilter(RequiredLoginFilter.java:129) > at > org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390) > at > org.hisp.dhis.security.filter.AutomaticAccessFilter.doFilter(AutomaticAccessFilter.java:112) > at > org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390) > at > org.springframework.security.ui.logout.LogoutFilter.doFilterHttp(LogoutFilter.java:89) > at > org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) > at > org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390) > at > org.springframework.security.ui.AbstractProcessingFilter.doFilterHttp(AbstractProcessingFilter.java:278) > at > org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) > at > org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390) > at > org.springframework.security.context.HttpSessionContextIntegrationFilter.doFilterHttp(HttpSessionContextIntegrationFilter.java:235) > at > org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) > at > org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390) > at > org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:175) > at > org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) > at > org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > at > org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) > at > org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293) > at > org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:849) > at > org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583) > at > org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:454) > at java.lang.Thread.run(Thread.java:636) > Caused by: java.sql.SQLException: Lock wait timeout exceeded; try > restarting transaction > at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1055) > at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956) > at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3491) > at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3423) > at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1936) > at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2060) > at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2536) > at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1564) > at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1485) > at > org.amplecode.quick.batchhandler.AbstractBatchHandler.flush(AbstractBatchHandler.java:274) > ... 89 more > > ================================================================== > > This seems to come again from database thing. > > Caveman > > > > On Sun, Jul 11, 2010 at 5:03 PM, Jason Pickering < > jason.p.picker...@gmail.com> wrote: > >> A very common mistake is not having generated the resource tables, >> namely "orgunitstructure". Consult the documentation for more details >> on how to generate these tables. >> >> Regards, >> Jason >> >> >> On Sun, Jul 11, 2010 at 4:27 PM, Orvalho Augusto <orvaq...@gmail.com> >> wrote: >> > I have a dataelement collected at a Health Centre level (eg: ats_posfem) >> in >> > one province and only in some particular districts. In unpredictible >> future >> > at National level we will be collecting on every health centre. >> > >> > Now, my ignorance: How can I obtain the provincial total on Report >> Table? I >> > have been battled with DHIS so far and nothing. >> > >> > Thanks guys >> > Caveman >> > >> > >> > _______________________________________________ >> > Mailing list: >> > https://launchpad.net/~dhis2-devs<https://launchpad.net/%7Edhis2-devs> >> > Post to : dhis2-devs@lists.launchpad.net >> > Unsubscribe : >> > https://launchpad.net/~dhis2-devs<https://launchpad.net/%7Edhis2-devs> >> > More help : https://help.launchpad.net/ListHelp >> > >> > >> >> >> >> -- >> -- >> Jason P. Pickering >> email: jason.p.picker...@gmail.com >> tel:+260968395190 >> > > > >
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