In some cases submodules may still not be deinitialzied even with the
more aggressive deinit flags.  In these cases the checkout will report a
warning and attempt to continue the checkout process.

Cc: Ashley E Desimone <ashley.e.desim...@intel.com>
Cc: Nate DeSimone <nathaniel.l.desim...@intel.com>
Cc: Puja Pandya <puja.pan...@intel.com>
Cc: Bret Barkelew <bret.barke...@microsoft.com>
Cc: Prince Agyeman <prince.agye...@intel.com>
Cc: Erik Bjorge <erik.c.bjo...@intel.com>
Signed-off-by: Erik Bjorge <erik.c.bjo...@intel.com>
---
 edkrepo/commands/checkout_pin_command.py | 9 +++++++--
 edkrepo/common/common_repo_functions.py  | 8 +++++++-
 edkrepo/common/humble.py                 | 3 +++
 3 files changed, 17 insertions(+), 3 deletions(-)

diff --git a/edkrepo/commands/checkout_pin_command.py 
b/edkrepo/commands/checkout_pin_command.py
index 39c5aeb..1c58113 100644
--- a/edkrepo/commands/checkout_pin_command.py
+++ b/edkrepo/commands/checkout_pin_command.py
@@ -16,7 +16,7 @@ import edkrepo.commands.arguments.checkout_pin_args as 
arguments
 import edkrepo.commands.humble.checkout_pin_humble as humble
 from edkrepo.common.common_repo_functions import sparse_checkout_enabled, 
reset_sparse_checkout, sparse_checkout
 from edkrepo.common.common_repo_functions import check_dirty_repos, 
checkout_repos, combinations_in_manifest
-from edkrepo.common.humble import SPARSE_CHECKOUT, SPARSE_RESET
+from edkrepo.common.humble import SPARSE_CHECKOUT, SPARSE_RESET, 
SUBMODULE_DEINIT_FAILED
 from edkrepo.common.edkrepo_exception import 
EdkrepoInvalidParametersException, EdkrepoProjectMismatchException
 from edkrepo.common.workspace_maintenance.manifest_repos_maintenance import 
list_available_manifest_repos
 from edkrepo.common.workspace_maintenance.manifest_repos_maintenance import 
find_source_manifest_repo
@@ -71,7 +71,12 @@ class CheckoutPinCommand(EdkrepoCommand):
             print(SPARSE_RESET)
             reset_sparse_checkout(workspace_path, manifest_sources)
         submodule_combo = pin.general_config.current_combo
-        deinit_full(workspace_path, manifest, args.verbose)
+        try:
+            deinit_full(workspace_path, manifest, args.verbose)
+        except Exception as e:
+            print(SUBMODULE_DEINIT_FAILED)
+            if args.verbose:
+                print(e)
         pin_repo_sources = 
pin.get_repo_sources(pin.general_config.current_combo)
         try:
             checkout_repos(args.verbose, args.override, pin_repo_sources, 
workspace_path, manifest)
diff --git a/edkrepo/common/common_repo_functions.py 
b/edkrepo/common/common_repo_functions.py
index 313a1ca..a6a38cf 100644
--- a/edkrepo/common/common_repo_functions.py
+++ b/edkrepo/common/common_repo_functions.py
@@ -50,6 +50,7 @@ from edkrepo.common.humble import INCLUDED_URL_LINE, 
INCLUDED_INSTEAD_OF_LINE, I
 from edkrepo.common.humble import ERROR_WRITING_INCLUDE, 
MULTIPLE_SOURCE_ATTRIBUTES_SPECIFIED
 from edkrepo.common.humble import VERIFY_GLOBAL, VERIFY_ARCHIVED, VERIFY_PROJ, 
VERIFY_PROJ_FAIL
 from edkrepo.common.humble import VERIFY_PROJ_NOT_IN_INDEX, VERIFY_GLOBAL_FAIL
+from edkrepo.common.humble import SUBMODULE_DEINIT_FAILED
 from edkrepo.common.pathfix import get_actual_path
 from project_utils.sparse import BuildInfo, process_sparse_checkout
 from edkrepo.config.config_factory import get_workspace_path
@@ -523,7 +524,12 @@ def checkout(combination_or_sha, verbose=False, 
override=False, log=None):
     # Deinit all submodules due to the potential for issues when switching
     # branches.
     if combo_or_sha != manifest.general_config.current_combo:
-        deinit_full(workspace_path, manifest, verbose)
+        try:
+            deinit_full(workspace_path, manifest, verbose)
+        except Exception as e:
+            print(SUBMODULE_DEINIT_FAILED)
+            if verbose:
+                print(e)
 
     print(CHECKING_OUT_COMBO.format(combo_or_sha))
 
diff --git a/edkrepo/common/humble.py b/edkrepo/common/humble.py
index f905357..763b9a6 100644
--- a/edkrepo/common/humble.py
+++ b/edkrepo/common/humble.py
@@ -155,3 +155,6 @@ BRANCH = '    Branch : {0}'
 COMMIT = '    Commit Id: {0}'
 WRITING_PIN_FILE = 'Writing pin file to {0} ...'
 COMMIT_MESSAGE = 'Pin file for project: {0} \nPin Description: {1}'
+
+# Common submodule error messages
+SUBMODULE_DEINIT_FAILED = 'Warning: Unable to remove all submodule content'
-- 
2.21.0.windows.1


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