Rui Fan created FLINK-40517:
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             Summary: Checkpointing-during-recovery drops cross-channel 
watermark / watermark-status aggregation on fan-in rescale
                 Key: FLINK-40517
                 URL: https://issues.apache.org/jira/browse/FLINK-40517
             Project: Flink
          Issue Type: Sub-task
          Components: Runtime / Checkpointing
            Reporter: Rui Fan
            Assignee: Rui Fan


On the normal recovery path, when a rescale fans several old input channels 
into one new channel, 
[`DemultiplexingRecordDeserializer.getNextRecord`](https://github.com/apache/flink/blob/76e774e04ff84ea305714153c5f4790fff98437c/flink-runtime/src/main/java/org/apache/flink/streaming/runtime/io/recovery/DemultiplexingRecordDeserializer.java#L108-L131)
 aggregates the recovered non-record elements across the merged old channels: 
it emits the **min** watermark (suppressing it until every merged channel has 
one) and `ACTIVE` if **any** channel is active. This reproduces the pre-rescale 
`min(wmA, wmB, ...)` semantics so the operator watermark is never advanced past 
what any old channel justifies.


With *checkpointing during recovery* (CDR, 
`execution.checkpointing.during-recovery.enabled`) enabled, this aggregation 
moves to the unspilling thread, but 
[`GateFilterHandler.filterAndRewrite`](https://github.com/apache/flink/blob/76e774e04ff84ea305714153c5f4790fff98437c/flink-runtime/src/main/java/org/apache/flink/runtime/checkpoint/channel/ChannelStateFilteringHandler.java#L294-L302)
 only filters records and passes watermarks and statuses through **verbatim**. 
So on a fan-in rescale a high watermark from one merged channel advances the 
operator watermark prematurely and legitimately in-flight lower-timestamp 
records get dropped as late (silent data loss), and an `IDLE` from one merged 
channel wrongly marks the whole channel idle (broken alignment; no data loss).


**Trigger**: CDR enabled + unaligned-checkpoint restore with in-flight state + 
a fan-in rescale (scale-down / ambiguous keyed exchange); the data-loss symptom 
additionally needs event-time watermarks and a late-dropping operator. Without 
CDR the same rescale is correct.


**Fix**: do the same min-watermark / any-active aggregation in the unspilling 
thread, where the per-old-channel `VirtualChannel`s already hold 
`lastWatermark` / `watermarkStatus`, instead of passing them through verbatim 
(`NO_RESCALE` needs no change). Since segments are written per new channel in 
arrival order, a watermark must be held until all old channels folding into 
that new channel are drained.



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