Sayat Satybaldiyev created FLINK-11171:
------------------------------------------
Summary: Unexpected timestamp deserialization failure in RocksDB
state backend
Key: FLINK-11171
URL: https://issues.apache.org/jira/browse/FLINK-11171
Project: Flink
Issue Type: Bug
Components: State Backends, Checkpointing
Affects Versions: 1.7.0
Reporter: Sayat Satybaldiyev
We have a job that joins two data stream via Process function and using
ValueState TTL with RocksDB backends. The jobs constantly fail to checkpoint
due to timestamp serialization error.
TTL state config
{code:java}
StateTtlConfig ttlConfig = StateTtlConfig
.newBuilder(Time.hours(recommendationRetentionHr))
.neverReturnExpired()
.setUpdateType(StateTtlConfig.UpdateType.OnCreateAndWrite)
.cleanupFullSnapshot()
.build();
{code}
Error
{code:java}
2018-12-16 06:02:12,609 INFO
org.apache.flink.runtime.checkpoint.CheckpointCoordinator - Triggering
checkpoint 31 @ 1544940132568 for job 7825029dc256542aa312c0b68ecf0631.
2018-12-16 06:22:12,609 INFO
org.apache.flink.runtime.checkpoint.CheckpointCoordinator - Checkpoint 31
of job 7825029dc256542aa312c0b68ecf0631 expired before completing.
2018-12-16 06:22:12,637 INFO
org.apache.flink.runtime.checkpoint.CheckpointCoordinator - Triggering
checkpoint 32 @ 1544941332609 for job 7825029dc256542aa312c0b68ecf0631.
2018-12-16 06:22:12,899 INFO
org.apache.flink.runtime.checkpoint.CheckpointCoordinator - Decline
checkpoint 32 by task 176c8b3c3ff190d183415ab77b89344c of job
7825029dc256542aa312c0b68ecf0631.
2018-12-16 06:22:12,900 INFO
org.apache.flink.runtime.checkpoint.CheckpointCoordinator - Discarding
checkpoint 32 of job 7825029dc256542aa312c0b68ecf0631.
java.lang.Exception: Could not materialize checkpoint 32 for operator
joined-stream (1/6).
at
org.apache.flink.streaming.runtime.tasks.StreamTask$AsyncCheckpointRunnable.handleExecutionException(StreamTask.java:942)
at
org.apache.flink.streaming.runtime.tasks.StreamTask$AsyncCheckpointRunnable.run(StreamTask.java:884)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.util.concurrent.ExecutionException:
org.apache.flink.util.FlinkRuntimeException: Unexpected timestamp
deserialization failure
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at org.apache.flink.util.FutureUtil.runIfNotDoneAndGet(FutureUtil.java:53)
at
org.apache.flink.streaming.api.operators.OperatorSnapshotFinalizer.<init>(OperatorSnapshotFinalizer.java:47)
at
org.apache.flink.streaming.runtime.tasks.StreamTask$AsyncCheckpointRunnable.run(StreamTask.java:853)
... 5 more
Caused by: org.apache.flink.util.FlinkRuntimeException: Unexpected timestamp
deserialization failure
at
org.apache.flink.runtime.state.ttl.TtlStateSnapshotTransformer$TtlSerializedValueStateSnapshotTransformer.filterOrTransform(TtlStateSnapshotTransformer.java:94)
at
org.apache.flink.runtime.state.ttl.TtlStateSnapshotTransformer$TtlSerializedValueStateSnapshotTransformer.filterOrTransform(TtlStateSnapshotTransformer.java:79)
at
org.apache.flink.contrib.streaming.state.iterator.RocksTransformingIteratorWrapper.filterOrTransform(RocksTransformingIteratorWrapper.java:70)
at
org.apache.flink.contrib.streaming.state.iterator.RocksTransformingIteratorWrapper.seekToFirst(RocksTransformingIteratorWrapper.java:48)
at
org.apache.flink.contrib.streaming.state.iterator.RocksStatesPerKeyGroupMergeIterator.buildIteratorHeap(RocksStatesPerKeyGroupMergeIterator.java:128)
at
org.apache.flink.contrib.streaming.state.iterator.RocksStatesPerKeyGroupMergeIterator.<init>(RocksStatesPerKeyGroupMergeIterator.java:68)
at
org.apache.flink.contrib.streaming.state.snapshot.RocksFullSnapshotStrategy$SnapshotAsynchronousPartCallable.writeKVStateData(RocksFullSnapshotStrategy.java:312)
at
org.apache.flink.contrib.streaming.state.snapshot.RocksFullSnapshotStrategy$SnapshotAsynchronousPartCallable.writeSnapshotToOutputStream(RocksFullSnapshotStrategy.java:258)
at
org.apache.flink.contrib.streaming.state.snapshot.RocksFullSnapshotStrategy$SnapshotAsynchronousPartCallable.callInternal(RocksFullSnapshotStrategy.java:223)
at
org.apache.flink.contrib.streaming.state.snapshot.RocksFullSnapshotStrategy$SnapshotAsynchronousPartCallable.callInternal(RocksFullSnapshotStrategy.java:176)
at
org.apache.flink.runtime.state.AsyncSnapshotCallable.call(AsyncSnapshotCallable.java:76)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at org.apache.flink.util.FutureUtil.runIfNotDoneAndGet(FutureUtil.java:50)
... 7 more
2018-12-16 06:22:14,248 WARN
org.apache.flink.runtime.checkpoint.CheckpointCoordinator - Received late
message for now expired checkpoint attempt 32 from
f69eae02946afadeaaefb470472fd36d of job 7825029dc256542aa312c0b68ecf0631.
2018-12-16 06:22:14,248 WARN
org.apache.flink.runtime.checkpoint.CheckpointCoordinator - Received late
message for now expired checkpoint attempt 32 from
4da75b007f58259167868d193208e45e of job 7825029dc256542aa312c0b68ecf0631.
{code}
Error in Job Manager State, each 20min the interval for checkpointing
{code:java}
2018-12-16 05:43:12,264 WARN org.apache.hadoop.hdfs.DFSClient
- DFSOutputStream ResponseProcessor exception for block
BP-1761982338-88.99.139.199-1495110347706:blk_1143342640_69606587
java.io.IOException: Bad response ERROR for block
BP-1761982338-88.99.139.199-1495110347706:blk_1143342640_69606587 from datanode
DatanodeInfoWithStorage[159.69.65.126:50010,DS-b0de28d5-53a5-41e8-9ff4-698520275b86,DISK]
at
org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer$ResponseProcessor.run(DFSOutputStream.java:883)
2018-12-16 05:43:12,264 WARN org.apache.hadoop.hdfs.DFSClient
- Error Recovery for block
BP-1761982338-88.99.139.199-1495110347706:blk_1143342640_69606587 in pipeline
DatanodeInfoWithStorage[94.130.13.247:50010,DS-075ddc51-750f-4163-9c6a-1a139a265aa7,DISK],
DatanodeInfoWithStorage[xxxx:50010,DS-b17733c5-35d9-47aa-8400-fbd198fcdaa6,DISK],
DatanodeInfoWithStorage[xxxx:50010,DS-b0de28d5-53a5-41e8-9ff4-698520275b86,DISK]:
datanode
2(DatanodeInfoWithStorage[xxxxxxx:50010,DS-b0de28d5-53a5-41e8-9ff4-698520275b86,DISK])
is bad.
2018-12-16 05:43:12,267 WARN org.apache.hadoop.hdfs.DFSClient
- DataStreamer Exception
org.apache.hadoop.ipc.RemoteException(java.io.IOException):
BP-1761982338-88.99.139.199-1495110347706:blk_1143342640_69606587 does not
exist or is not under Constructionnull
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkUCBlock(FSNamesystem.java:6683)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.updateBlockForPipeline(FSNamesystem.java:6751)
at
org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.updateBlockForPipeline(NameNodeRpcServer.java:930)
at
org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.updateBlockForPipeline(ClientNamenodeProtocolServerSideTranslatorPB.java:966)
at
org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at
org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:640)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:982)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2351)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2347)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1866)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2345)
at org.apache.hadoop.ipc.Client.call(Client.java:1476)
at org.apache.hadoop.ipc.Client.call(Client.java:1413)
at
org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:229)
at com.sun.proxy.$Proxy10.updateBlockForPipeline(Unknown Source)
at
org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.updateBlockForPipeline(ClientNamenodeProtocolTranslatorPB.java:907)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:191)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy11.updateBlockForPipeline(Unknown Source)
at
org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.setupPipelineForAppendOrRecovery(DFSOutputStream.java:1290)
at
org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.processDatanodeError(DFSOutputStream.java:990)
at
org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:507)
2018-12-16 05:43:12,409 WARN
org.apache.flink.runtime.state.filesystem.FsCheckpointStreamFactory - Could
not close the state stream for
hdfs:/user/flink/rocksdb_v2/tracking_clicks/7825029dc256542aa312c0b68ecf0631/chk-30/9f4297ba-6966-487a-8d20-9031c5ba8273.
org.apache.hadoop.ipc.RemoteException(java.io.IOException):
BP-1761982338-xxxxx-1495110347706:blk_1143342640_69606587 does not exist or is
not under Constructionnull
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkUCBlock(FSNamesystem.java:6683)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.updateBlockForPipeline(FSNamesystem.java:6751)
at
org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.updateBlockForPipeline(NameNodeRpcServer.java:930)
at
org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.updateBlockForPipeline(ClientNamenodeProtocolServerSideTranslatorPB.java:966)
at
org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at
org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:640)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:982)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2351)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2347)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1866)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2345)
at org.apache.hadoop.ipc.Client.call(Client.java:1476)
at org.apache.hadoop.ipc.Client.call(Client.java:1413)
at
org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:229)
at com.sun.proxy.$Proxy10.updateBlockForPipeline(Unknown Source)
at
org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.updateBlockForPipeline(ClientNamenodeProtocolTranslatorPB.java:907)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:191)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy11.updateBlockForPipeline(Unknown Source)
at
org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.setupPipelineForAppendOrRecovery(DFSOutputStream.java:1290)
at
org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.processDatanodeError(DFSOutputStream.java:990)
{code}
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