I've just pushed a fix to my "release-0.8" branch. If you want, you can build the version with the fix yourself:
git clone https://github.com/rmetzger/flink.git cd flink git checkout release-0.8 mvn clean install -DskipTests Once that has finished, you can set the version in your pom.xml to "0.8-SNAPSHOT" and the issues should be resolved. I'll merge the fix to the official "release-0.8" branch at Apache once the integration tests succeeded. Robert On Sun, Mar 15, 2015 at 4:56 PM, Robert Metzger <rmetz...@apache.org> wrote: > Hi Filip, > > thank you for reporting the issue. Its an issue with the AvroTypeInfo. > I've pushed a fix to the "master" branch. > If you want, you can port your program to 0.9-SNAPSHOT, there, the issue > should be fixed. > > I'll also push a fix to the "release-0.8" branch if you want to keep using > the 0.8 series of Flink. > > Sorry for the inconvenience. > Please let us know if you need more help getting your Flink program to > work. > > Best, > Robert > > On Sun, Mar 15, 2015 at 2:22 PM, Filip Łęczycki <filipleczy...@gmail.com> > wrote: > >> Hi >> >> I have an issue while running the following line while usig flink v 0.8.1 >> (: >> val asdf = new AvroTypeInfo[AlignmentRecord](classOf[AlignmentRecord]) >> >> Alignment record belongs to the package : >> org.bdgenomics.formats.avro.AlignmentRecord >> >> http://mvnrepository.com/artifact/org.bdgenomics.bdg-formats/bdg-formats/0.4.0 >> >> While trying to run I am receivng following exception: >> >> Exception in thread "main" java.lang.IndexOutOfBoundsException >> at >> org.apache.flink.api.java.typeutils.PojoTypeInfo.getPojoFieldAt(PojoTypeInfo.java:178) >> at >> org.apache.flink.api.java.typeutils.AvroTypeInfo.generateFieldsFromAvroSchema(AvroTypeInfo.java:52) >> at >> org.apache.flink.api.java.typeutils.AvroTypeInfo.<init>(AvroTypeInfo.java:38) >> at flinkTest.FlinkBAMReader$.main(FlinkBAMReader.scala:74) >> >> While debugging I have noticed that the generated AvroTypeInfo class has >> a fields array with 42 elements, while the totalFIelds property has value >> 52 (please find screenshot attached) which seems to be the cause of the >> exception. Could you please help me o determine what may be the issue with >> the parser? Is this some bug in AvroTypeInfo class or the AlignmentRecord >> class is somehow corrupted? >> >> Best Regards/Pozdrawiam, >> Filip Łęczycki >> > >
