silwalr opened a new issue, #24:
URL: https://github.com/apache/ctakes/issues/24
Hi all,
I am running into the following issue when I attempt to load tables into
**MSSQL Server** using Java Data Loader (jdl) utility in
**cTAKES-6.0.0-SNAPSHOT**. The jdl utility worked fine in cTAKES-5.1.0. The jdl
is part of **ctakes-ytex** package.
It looks like the `loader` if failing to read the contents of the `.txt`
file:
`[java] 12 Sep 2024 09:16:31 INFO CsvLoader - insert into null () values ()`
**jdbc.sqlcmd** is working fine.
**ERROR Trace:**
```
uima.create:
jdbc.sqlcmd:
[echo] db.schema dbo
[echo] umls.schema UMLS
[echo] umls.catalog YTEX_TEST
[echo] execute ./mssql/uima/create_reference.sql
[copy] Copying 1 file to C:\Users\USERID\AppData\Local\Temp\4
[echo] executing C:\Users\USERID\AppData\Local\Temp\4\ytex424002541.sql
[sql] Executing resource:
C:\Users\USERID\AppData\Local\Temp\4\ytex424002541.sql
[sql] 9 of 9 SQL statements executed successfully
[delete] Deleting: C:\Users\USERID\AppData\Local\Temp\4\ytex424002541.sql
[delete] Deleting:
C:\Users\USERID\AppData\Local\Temp\4\ytex1717560066use.sql
...
uima.create.trigger:
init:
[echo] java.io.tmpdir C:\Users\USERID\AppData\Local\Temp\4\
[echo] basedir E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data
[echo] umls.data E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data/umls
init.conn:
[copy] Copying 1 file to C:\Users\USERID\AppData\Local\Temp\4
uima.ref.load:
jdl:
[echo] jdl.format ref_uima_type.xml
[echo] jdl.data ref_uima_type.txt
[echo] db.schema dbo
[echo] umls.schema UMLS
[echo] umls.prefix YTEX_TEST.UMLS.
[copy] Copying 1 file to C:\Users\USERID\AppData\Local\Temp\4
[java] 12 Sep 2024 09:16:31 INFO CsvLoader - delimiter 44 encapsulator
65534
[java] 12 Sep 2024 09:16:31 INFO CsvLoader - insert into null ()
values ()
[java] Exception in thread "main" java.lang.NullPointerException:
Cannot invoke "java.lang.Number.intValue()" because "ncommit" is null
[java] at
org.apache.ctakes.jdl.data.loader.CsvLoader.dataInsert(CsvLoader.java:225)
[java] at org.apache.ctakes.jdl.AppJdl.execute(AppJdl.java:87)
[java] at org.apache.ctakes.jdl.AppMain.main(AppMain.java:84)
BUILD FAILED
E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data\build.xml:573: The
following error occurred while executing this line:
E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data\build.xml:589: The
following error occurred while executing this line:
E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data\build.xml:535: Java
returned: 1
```
I am encountering this error when I run the following **command:**
`E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data>ant
-Dconfig.local=..\..\target\classes uima.all > uima_all.out 2>&1`
I am using the following versions of JAVA and ant:
```
E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data>java --version
openjdk 17.0.10 2024-01-16
OpenJDK Runtime Environment Temurin-17.0.10+7 (build 17.0.10+7)
OpenJDK 64-Bit Server VM Temurin-17.0.10+7 (build 17.0.10+7, mixed mode,
sharing)
E:\cTAKES\cTAKES-source\ctakes-ytex\scripts\data>ant -version
Apache Ant(TM) version 1.10.14 compiled on August 16 2023
```
Thanks for any help you can provide!
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