RE the Dependency Parser, it is part of the release.
Just use the PiperCreator app and look for it in the list of modules. It
will tell you it's prerequisites, and therefore where in your Piper file it
belongs.
addDescription ClearNLPDependencyParserAE
- Peter
On Thu, Aug 19, 2021 at 2:39 AM Benjamin hansen <benjaminkakke...@gmail.com>
wrote:
> Thanks for the input.
> So I am trying to use
> the ClinicalPipelineFactory.getTokenProcessingPipeline which includes the
> LVG which seems to be having the issue. But you say i can just replace the
> LVG part with the DependencyParser in that pipeline? Can you elaborate a
> bit on where I can find the DependencyParser?
>
>
> On Wed, Aug 18, 2021 at 5:56 PM Peter Abramowitsch <
> pabramowit...@gmail.com>
> wrote:
>
> > Hi Benjamin,
> >
> > If what you're looking for are the lemmas of tokens, just use the
> > DependencyParser instead of LVG
> > I had another problem with LVG as well, but I think that it might be
> simply
> > that all the needed resources are not being copied into the right place.
> > This was done without the lvg
> >
> > {
> > "_type": "ConllDependencyNode",
> > "sofa": 1,
> > "begin": 3,
> > "end": 10,
> > "id": 2,
> > "form": "decided",
> > "lemma": "decide",
> > "cpostag": "VBD",
> > "postag": "VBD",
> > "feats": "_",
> > "head": 137,
> > "deprel": "root",
> > "pdeprel": "_"
> > }
> >
> > On Wed, Aug 18, 2021 at 7:29 AM Finan, Sean <
> > sean.fi...@childrens.harvard.edu> wrote:
> >
> > > Hi Benjamin,
> > >
> > > My first question is: what pipeline are you trying to run?
> > >
> > > My second question is: Do you really need to use LVG?
> > >
> > > Sean
> > > ________________________________________
> > > From: Benjamin hansen <benjaminkakke...@gmail.com>
> > > Sent: Wednesday, August 18, 2021 3:07 AM
> > > To: dev@ctakes.apache.org
> > > Subject: An exception occured while executing the Java class. URI is
> not
> > > hierarchical [EXTERNAL]
> > >
> > > * External Email - Caution *
> > >
> > >
> > > While working at a simple pipeline example I got this error:
> > >
> > > *java.lang.IllegalArgumentException*: *URI is not hierarchical*
> > >
> > > *at* java.io.File.<init> (*File.java:420*)
> > >
> > > *at* org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load (
> > > *LvgCmdApiResourceImpl.java:65*)
> > >
> > >
> > > I found that this issue has already been reported 4 years ago here
> > >
> > >
> >
> https://urldefense.com/v3/__https://issues.apache.org/jira/browse/CTAKES-445__;!!NZvER7FxgEiBAiR_!9HBmXkq30TUdwnSpuHc8_7iEVkoMAiJ3p_rSTXE5d90TARHEdioOMNukOUaL6eB5CboTRBMsOYI$
> > >
> > >
> > > I am on MacOS which the workaround patched proposed in that thread does
> > not
> > > fix... And like the last comment in the thread says - the patch likely
> > also
> > > does not work on linux.
> > >
> > >
> > > This seems to be quite a serious bug since both mac and linux would be
> > > serious development and production platforms for ctakes users.
> > >
> > >
> > > Is there no fix for this after 4 years?
> > >
> >
>
