Oh, awesome. Thanks. I didn't realize it was only in the snapshot version.
On Fri, May 28, 2021 at 12:40 PM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi John,
>
> It shouldn't be excluded from ctakes-core, but if you are looking at the
> binary distributable or maven central artifact for ctakes 4.0.0.1 then it
> will definitely be absent as it didn't exist in that version. It is only
> in the trunk version of ctakes currently under development. You can use
> the trunk version in your maven project.
>
> In your pom:
> ...
> <properties>
> <ctakes.version>4.0.1-SNAPSHOT</ctakes.version>
> ...
> <dependency>
> <groupId>org.apache.ctakes</groupId>
> <artifactId>ctakes-core</artifactId>
> <version>${ctakes.version}</version>
> ...
>
> And you might need:
> <repositories>
> <repository>
> <id>apache.snapshots</id>
> <name>Apache Development Snapshot Repository</name>
> <url>https://repository.apache.org/content/groups/snapshots/
> </url>
> <releases>
> <enabled>false</enabled>
> </releases>
> <snapshots>
> <enabled>true</enabled>
> </snapshots>
> </repository>
>
>
>
>
> Use Example:
>
> /**
> * Finds clinical procedures in text using regular expressions.
> * Accepts parameters for the procedure's regular expression and the
> procedure's CUI.
> */
> public class ApacheConDemoEngine extends JCasAnnotator_ImplBase {
>
> @ConfigurationParameter(
> name = "REGEX",
> description = "Regular Rexpression to use for matching clinical
> procedures.",
> defaultValue = "biopsy"
> )
> private String _regex;
>
> @ConfigurationParameter(
> name = "REGEX_CUI",
> description = "CUI for matched clinical procedure expressions.",
> defaultValue = "AC123"
> )
> private String _regexCui;
>
> /**
> * Finds Procedures using a regular expression and creates Identified
> Annotations.
> */
> @Override
> public void process( JCas jCas ) throws AnalysisEngineProcessException {
> IdentifiedAnnotationBuilder builder = new
> IdentifiedAnnotationBuilder()
> .group( SemanticGroup.PROCEDURE )
> .cui( _regexCui );
> try ( RegexSpanFinder finder = new RegexSpanFinder( _regex ) ) {
> finder.findSpans( jCas.getDocumentText() )
> .forEach( span ->
> builder
> .span( span )
> .build( jCas ) );
> } catch ( IllegalArgumentException iaE ) {
> throw new AnalysisEngineProcessException( iaE );
> }
> }
>
> }
>
>
> Sean
>
>
> ________________________________________
> From: John Doe <lucanus...@gmail.com>
> Sent: Friday, May 28, 2021 10:45 AM
> To: dev@ctakes.apache.org
> Subject: How to find IdentifiedAnnotationBuilder in build [EXTERNAL]
>
> * External Email - Caution *
>
>
> Hello,
>
> I'm just wondering where IdentifiedAnnotationBuilder is located in the
> ctakes lib. I see it in the source code in ctakes-core but I can't find it
> in any of the maven dependency packages. I also extracted the ctakes-core
> jar in CTAKES_HOME/lib and still didn't find it. Is there a simple way to
> use this builder? Ideally, I could just add a dependency to my pom and pull
> it in but I can't seem to find any that have it. Why is it excluded from
> ctakes-core?
>
> Thanks.
>
