I don't mean to butt in on another conversation, but for the UMLS authentication to work in 4.0.0.1, you would need to replace ctakes-dictionary-lookup-fast jar, the ctakes-dictionary-lookup.jar and for safety's sake the ctakes-core jar too.
Peter On Fri, Feb 26, 2021 at 6:01 PM Mullane, Sean *HS < sp...@hscmail.mcc.virginia.edu> wrote: > Can you check my understanding of how to apply the patch? I replaced the > ctakes-core-4.0.0.jar file in ./lib with ctakes-core-4.0.0.1.jar. I also > replaced the user/pass values in ctakes.profile with the API key values. > Are there any steps I missed there? > > Sean > > -----Original Message----- > From: Miller, Timothy <timothy.mil...@childrens.harvard.edu> > Sent: Friday, February 26, 2021 6:41 AM > To: dev@ctakes.apache.org > Subject: Re: 4.0.0.1 patch [EXTERNAL] > > Hi Sean, > I can't answer your primary question, but my recollection is that > 4.0.0.1 was an absolutely minimalist change to just fix the > authentication, so I don't think ytex would've been touched. > Tim > > > On Thu, 2021-02-25 at 17:24 +0000, Mullane, Sean *HS wrote: > > * External Email - Caution * > > > > > > Hello, > > > > I am just catching up with the NLM auth changes. I tried replacing the > > ctakes-core-4.0.0.jar file with ctakes-core-4.0.0.1.jar, and am > > getting this error: > > > > ERROR [PiperFileRunner] MESSAGE LOCALIZATION FAILED: Can't find > > resource for bundle java.util.PropertyResourceBundle, key No Analysis > > Component found for org.apache.ctakes.core.ae.CuiFilterAnnotator > > > > I saw a message from Tim Miller from December mentioning removing ytex > > components from ctakes-core. Was this done on the released version of > > 4.0.0.1? We're using ytex so I wonder if that may be the cause of this > > error. Or maybe applying the patch isn't as simple as drop-in > > replacing the jar? (I changed the API key in my config files and that > > seems to be working as expected). > > > > Thanks, > > Sean > > > > >
