Hi Finan
Thanks for the support you provide.
The solution you gave me before does not work anymore.
I cannot find RunPiperGui class anywhere in cTAKES now!.
has this chaged?
is there anyway I can run cTAKES GUI?
Thanks
On Monday, 23 December 2019, 06:27:36 am GMT-8, Finan, Sean
<sean.fi...@childrens.harvard.edu> wrote:
Hi Akram,
I think that the problem is your classpath.
When you run a main(..) class in intellij, it uses the classpath of the module
in which that class lies.
For the PIperRunnerGui it uses the classpath of ctakes-gui.
ctakes-gui does not have any dependency upon modules such as ctakes-chunker.
Running PiperRunnerGui.main(..) in ctakes-gui module has no ctakes-chunker
classes or files in the classpath.
Getting used to running with maven can take a little while.
Intellij does have some things that can help.
Instead of running just by main(..) methods, use specific run configurations.
https://www.jetbrains.com/help/idea/creating-and-editing-run-debug-configurations.html
1. In the top toolbar, select Run > Edit Configurations ...
This should launch a Run/Debug Configurations dialog.
2. Above the left panel, click the + button
This should pop up a list of Configuration types.
3. Select Application
This should populate the right panel with options.
4. The important items:
Main class : RunPiperGui
VM Options: -Xmx3g
Use classpath of Module: ctakes-examples
Sean
From: Akram <as...@yahoo.com>
Sent: Sunday, December 22, 2019 7:54 PM
To: dev@ctakes.apache.org; Finan, Sean
Subject: Re: "No piper file found for ChunkerSubPipe" on debug [EXTERNAL]
| * External Email - Caution *
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I have checked the file ChunkerSubPipe.piper for sure exists in
ctakes-chunker-res\target\classes\org\apache\ctakes\chunker\pipeline
and in \ctakes-chunker-res\src\main\resources\org\apache\ctakes\chunker\pipeline
loading DefaultTokenizerPipelineshows no errors, the problem only with
ChunkerSubPipe.piper
I tried to install cTAKES on 2 different computers and got same issue on both.
it only happens when I run from PiperRunnerGui (same as the image attached)
No problems if I use Profilers
On Monday, 23 December 2019, 4:54:05 am AEDT, Finan, Sean
<sean.fi...@childrens.harvard.edu> wrote:
Hi Akram,
I am not sure why you are seeing that error message.
That method will search the classpath for "ChunkerSubPipe.piper", which
includes the ctakes-chunker-res*.jar in the lib/ directory of a binary
installation or the ctakes-chunker-res/src/main/resources/ directory tree in a
source sandbox. It should also traverse the resources/ directory tree in both
installation types.
As long as the file exists in there and the classpath is set it should find it.
Can you check your installation and see if that file is missing for some reason?
The path is something like org.apache.ctakes.chunker.pipeline.
Sean
From: Akram <as...@yahoo.com.INVALID>
Sent: Sunday, December 22, 2019 3:50 AM
To: dev@ctakes.apache.org
Subject: "No piper file found for ChunkerSubPipe" on debug [EXTERNAL]
| * External Email - Caution *
|
I followed Sean's instructions to run "runPiperGUI" from Profiles using
"DefaultFastPipeline_Test.piper" file
works perfectly.
I tried to debug the process ( I will do some changes later )
I run "PiperRunnerGUI" using "DefaultFastPipeline_Test.piper" file
but I get this error !
"No piper file found for ChunkerSubPipe"
Then this error "Piper File not found: ChunkerSubPipe"
Then this error "Could not load Piper File
J:\cTAKES\ctakes-clinical-res\src\main\resources\org\apache\ctakes\clinical\pipeline\DefaultFastPipeline_Test.piper"
I tried to debug. and limited the problem in Line 319 in PiperFileReader.java
stream = FileLocator.getStreamQuiet( packageName.replace( '.', '/' ) +
"/pipeline/" + filePath );
Then stopped at getStreamQuietfunction and could not know why it does not find
the ChunkerSubPipe.piper!
Can someone help me identifying what is the cause of this problem?
Appreciate your help.
