Everyone, Interestingly enough, we're using ctakes in a docker container built using 4.0.0.1 and are passing in umls_pw and umls_username with the API key and placeholder as mentioned. This worked up until yesterday and now I am getting the error. Frustrating only begins to describe the issues that seem to creep up out of nowhere.
Just having a bad day I guess! 😀 On Wed, Feb 10, 2021 at 1:34 PM Monogyiou, Eugenia < eugenia.monogy...@nttdata.com> wrote: > Hello, > > We are probably not using the same exact version and although my main > issue proved to be different at the end, at some point during my > authentication issues...marathon I did get a similar message and I ended up > setting the value to "umls_api_key" for umls user and the umls pwd = > API_KEY wherever I could find relevant references in the source code. > > Again it may probably not be applicable in your case and even for my case, > I had to take other steps eventually to resolve my auth issues, but these > settings made or at least appeared to make that message go away for me so > thought I'd mention it just in case... > > Kind Regards, > > Eugenia Monogyiou | NTT Data UK > Consulting & IT Solutions Ltd. 1 Royal Exchange, London EC3V 3DG > > Mob: +44 (0)7971623683 Email: eugenia.monogy...@nttdata.com > > > -----Original Message----- > From: Peter Abramowitsch <pabramowit...@gmail.com> > Sent: 10 February 2021 19:20 > To: dev@ctakes.apache.org > Subject: Re: authentication issue? > > Hi Greg > > 401 means either not authenticated or there's a problem at the UMLS end - > which does happen every now and then. I've already told their guy about > it, But at this very instant 19:18 GMT, it is working > > 10 Feb 2021 20:18:43 INFO UmlsUserApprover - Checking UMLS Account at > https://utslogin.nlm.nih.gov/cas/v1/api-key: > ......10 Feb 2021 20:18:45 INFO UmlsUserApprover - UMLS Account has been > validated > > > Peter > > On Wed, Feb 10, 2021 at 7:12 PM Greg Silverman <g...@umn.edu.invalid> > wrote: > > > This had been working (4.0.0.1), but now am getting the following error: > > > > 10 Feb 2021 18:03:40 INFO SentenceDetector - Sentence detector model > file: > > org/apache/ctakes/core/sentdetect/sd-med-model.zip > > 10 Feb 2021 18:03:40 INFO TokenizerAnnotatorPTB - Initializing > > org.apache.ctakes.core.ae.TokenizerAnnotatorPTB > > 10 Feb 2021 18:03:40 INFO ContextDependentTokenizerAnnotator - Finite > > state machines loaded. > > 10 Feb 2021 18:03:40 INFO POSTagger - POS tagger model file: > > org/apache/ctakes/postagger/models/mayo-pos.zip > > 10 Feb 2021 18:03:41 INFO Chunker - Chunker model file: > > org/apache/ctakes/chunker/models/chunker-model.zip > > 10 Feb 2021 18:03:42 INFO AbstractJCasTermAnnotator - Using > > dictionary lookup window type: > > org.apache.ctakes.typesystem.type.textspan.Sentence > > 10 Feb 2021 18:03:42 INFO AbstractJCasTermAnnotator - Exclusion > > tagset > > loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG > > VBN VBP VBZ WDT WP WPS WRB > > 10 Feb 2021 18:03:42 INFO AbstractJCasTermAnnotator - Using minimum > > term text span: 3 > > 10 Feb 2021 18:03:42 INFO AbstractJCasTermAnnotator - Using > > Dictionary > > Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml > > 10 Feb 2021 18:03:42 INFO DictionaryDescriptorParser - Parsing > > dictionary > > specifications: > > 10 Feb 2021 18:03:42 ERROR UmlsUserApprover - umlsUser CHANGE_ME not > > allowed. It is a placeholder reminder. > > 10 Feb 2021 18:03:42 ERROR UmlsUserApprover - umlsPass CHANGE_ME not > > allowed. It is a placeholder reminder. > > 10 Feb 2021 18:03:42 INFO UmlsUserApprover - Checking UMLS Account at > > https://utslogin.nlm.nih.gov/cas/v1/api-key: > > .. > > 10 Feb 2021 18:03:43 ERROR UmlsUserApprover - Server returned HTTP > > response > > code: 401 for URL: https://utslogin.nlm.nih.gov/cas/v1/api-key > > 10 Feb 2021 18:03:43 ERROR PiperFileRunner - Initialization of > > annotator class "org.apache.ctakes.dictionary.lookup2.ae > .DefaultJCasTermAnnotator" > > failed. (Descriptor: <unknown>) > > /data/ctakes_out /usr/share/ctakes > > > > > > > > -- > > Greg M. Silverman > > Senior Systems Developer > > NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group> > > Department of Surgery > > University of Minnesota > > g...@umn.edu > > > Disclaimer: This email and any attachments are sent in strictest > confidence for the sole use of the addressee and may contain legally > privileged, confidential, and proprietary data. If you are not the intended > recipient, please advise the sender by replying promptly to this email and > then delete and destroy this email and any attachments without any further > use, copying or forwarding. > -- Greg M. Silverman Senior Systems Developer NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group> Department of Surgery University of Minnesota g...@umn.edu
