Hi Gandhi, Yes I added snomed, rxnorm and hugo( hgnc) so yes, i have thousands of Snomed associations in my script file. But some, like my example aren't there. These missing ones tend to be the short acronyms rather than the template phrases. But they're present in mmsys with the snomed mapping.
I tried to follow Jeff's suggestion of adding more likely vocabularies to these three but then i got inconsistent results. Some terms that had shown up with Snomed codes started being reported in other vocabs. It may or may not be connected, but could you explain the function/behavior of the source/destination checkboxes on the dictionary creator? Peter On Fri, Aug 14, 2020, 6:45 AM gandhi rajan <gandhiraja...@gmail.com> wrote: > Hi Peter, > > However I must be missing some bit of information on the use of mmsys or > the dictionary creator, because some very common terms are missing from my > dictionary but present in the released sno_rx > > >>> Do you mean the entries are missing in your database? When I tried the > latest UMLS installation I dont see snomed dictionary terms getting added > by default. Did you selected snomed dictionary in dictionary GUI or it > showed up in GUI? > > On Fri, Aug 14, 2020 at 9:32 AM Peter Abramowitsch < > pabramowit...@gmail.com> > wrote: > > > Hi All > > > > I'm able to create a subset with the UMLS mmsys tool, use the dictionary > > creator on the full UMLS release, create, install and tweak the scripts > > adding or removing aliases etc. My goal is simply to add HUGO gene terms > > to SNOMED and RXNORM. > > > > However I must be missing some bit of information on the use of mmsys or > > the dictionary creator, because some very common terms are missing from > my > > dictionary but present in the released sno_rx > > > > As an example, the acronym SOB > > in mmsys, the term SOB is present in my subset, and it is mapped into > > SNOMED with the expected CUI 13404 and SNOMEDIDs same as sno_rx > > I see the cui_tui mapping it into the correct TUI for a finding INSERT > > INTO TUI VALUES(13404,184) > > I see the cui and the preferred term "dyspnea" in my *script file, and I > > can resolve it in a note using the default consumer and obtaining the > > correct SNOMED ID > > I see lots of cui_term entries for the same CUI, and I can resolve them > > too. but SOB is not present in my cui terms. > > How did it get there? > > > > So either - I am not using one of the tools correctly, or in creating > > SNO_RX, someone has added SOB by hand rather than using the creator. And > > if they have, they have probably also done other tweaks. > > > > Sean, Ghandi or Jeff > > Can you explain this? > > > > Peter > > > > > -- > Regards, > Gandhi > > "The best way to find urself is to lose urself in the service of others > !!!" >
