I can help with this as well. I have some documentation that I have written for myself that would probably be useful. I've tried to keep a list of useful forum posts that contain information that could probably be more prominently displayed on the wiki.
On Fri, Jul 31, 2020 at 10:34 AM gandhi rajan <gandhiraja...@gmail.com> wrote: > Hi Peter, > > We can work together on this if you are interested. > > On Fri, Jul 31, 2020 at 7:44 PM Peter Abramowitsch < > pabramowit...@gmail.com> > wrote: > > > I could do it while the experience is fresh, although I only know the > happy > > path and not the deeper details in this area of the suite > > If you want me to, let me know how to get editing privileges on the Wiki. > > > > Peter > > > > On Fri, Jul 31, 2020 at 4:28 AM Finan, Sean < > > sean.fi...@childrens.harvard.edu> wrote: > > > > > Obviously Jeff is correct in all of his answers. Thank you Jeff! > > > > > > One comment: DictionaryDescriptor is a deprecated parameter name that > is > > > picked up by the piper creator when it inspects the code. However, I > am > > > not sure why the deprecated parameter name isn't working ... > > > > > > The wiki needs additional and more thorough information. If anybody > can > > > volunteer to work on it I (and future users) would really appreciate > it! > > > > > > Thanks, > > > Sean > > > > > > > > > ________________________________________ > > > From: Peter Abramowitsch <pabramowit...@gmail.com> > > > Sent: Thursday, July 30, 2020 9:02 PM > > > To: dev@ctakes.apache.org > > > Subject: Re: Problem trying to load a custom dictionary [EXTERNAL] > > > > > > * External Email - Caution * > > > > > > > > > Thanks Jeff > > > > > > That worked! > > > > > > Seems like something that should get fixed in the PiperCreator and in > the > > > documentation. > > > > > > With a life of assuming that every mistake is my own error, the last > > thing > > > I would have expected was > > > a generator of incorrect params. > > > > > > Peter > > > > > > On Thu, Jul 30, 2020 at 4:59 PM Jeffrey Miller <jeff...@gmail.com> > > wrote: > > > > > > > Peter, > > > > > > > > 1) This is loaded by cTAKES, you don't need to manually create the > > > > database. > > > > 2) I can't see the highlights here, but I think that file should be > > okay > > > as > > > > created by the GUI. > > > > 3) I think the parameter name to configure your dictionary location > is > > > > LookupXml instead of DictionaryDescriptor > > > > > > > > Jeff > > > > > > > > On Thu, Jul 30, 2020 at 6:49 PM Peter Abramowitsch < > > > > pabramowit...@gmail.com> > > > > wrote: > > > > > > > > > A couple of questions about installing a custom dictionary in > lookup > > > > fast. > > > > > I hope I'm not too far off the track. > > > > > > > > > > I've used the dictionary creator with a UMLS install to create the > > > > > dictionary script, prop file, and xml file in my ctakes resources > > tree > > > > > > > > > > 1. Do I have to manually run this script to execute all its SQL > > > > statements > > > > > into hsqldb or is this executed by the cTakes program when it > > > encounters > > > > > the XML descriptor? > > > > > If manual running is needed, are there instructions on how and > where > > to > > > > > load the script? > > > > > > > > > > 2. The xml file generated by the dictionary creator contains lines > > > with > > > > > duplicate names-- see yellow highlight. Is this correct? > > > > > <name>my_dict_v1Terms</name> > > > > > <property key="jdbcUrl" > > > > > > > > > > > > > > > value="jdbc:hsqldb:file:resources/org/apache/ctakes/dictionary/lookup/fast/ > > > > > my_dict_v1/my_dict_v1"/> > > > > > > > > > > 3. Try as I might I cannot get ctakes to load anything other than > > > > > sno_rx. I'm using a piper file with an entry looking like > > > > > .... > > > > > add org.apache.ctakes.dictionary.lookup2.ae > > > > .OverlapJCasTermAnnotator > > > > > > > > > > > > > > > > > > > > DictionaryDescriptor=org/apache/ctakes/dictionary/lookup/fast/my_dict_v1.xml > > > > > .... > > > > > Not sure if they're looked at any more but I also changed these xml > > > files > > > > > under desc as well. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsOverlapLookupAnnotator.xml > > > > > > > > > > > > > > > > > > > > > > > > > desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml > > > > > > > > > > But I can't even get it to fail to try to load mine. > > > > > my log looks like this > > > > > > > > > > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - > > Exclusion > > > > > tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO > VB > > > VBD > > > > > VBG VBN VBP VBZ WDT WP WPS WRB > > > > > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - Using > > > > minimum > > > > > term text span: 3 > > > > > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - Using > > > > > Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/ > > > > > sno_rx_16ab.xml > > > > > > > > > > > > > > > Any suggestions? > > > > > > > > > > Regards, Peter > > > > > > > > > > > > > > > > > -- > Regards, > Gandhi > > "The best way to find urself is to lose urself in the service of others > !!!" >
