Hi Honey I am using the anatomical site mention in my pipeline, but at the moment, the results are extremely poor. To be honest though, I have not had time to see how it is implemented. The results fall into three categories
missing 2cm lesion on left foot result (null) obvious hip fracture result (hip structure) wrong cervical cancer result(neck) yes it actually gave me that value! That last example gives a hint as to the implementation and its limitations. One day if I have time, I will have a look Peter Peter On Fri, Jun 5, 2020 at 11:54 PM Honey gandhi <gandhihoney...@icloud.com.invalid> wrote: > Is there any other way to find relationship between medication and its > dose/route/frequency or between anatomical site and its sign symptoms? > > Thanks, > Honey G. > > > On 06-Jun-2020, at 12:09 PM, Peter Abramowitsch <pabramowit...@gmail.com> > wrote: > > > > Some granular areas are unfinished in cTakes and in these cases, > attributes > > mentioned are just placeholders for functionality that needs to be filled > > in. I can't speak specifically to Medication Freq/Dose/Route, but much > > work is left to be done and contributed throughout the system. Bodysite > is > > another one of these. Or conditionality and confidence. In some cases > you > > will never find them populated, or in others you'll find that values can > > only be detected in a small number of contexts. > > > > Unless an army of highly qualified developers and informaticists with > free > > time materializes to take it much further, cTakes will always be a work > in > > progress. But many of us have already found it to be highly effective in > > its current form, and some have made private customizations to suit our > own > > needs. > > > > Peter > > > > On Fri, Jun 5, 2020 at 2:58 AM Honey gandhi > > <gandhihoney...@icloud.com.invalid> wrote: > > > >> Hi > >> > >> We are exploring ctakes capabilities to use it as our NLP engine to > parse > >> clinical data. > >> > >> Though we are able to parse the data at high level. We are not able to > get > >> values for medication frequency, duration, allergy and other related > >> specifications. > >> It should have ideally populated values for ‘MedicationFrequency', > >> ‘MedicationAllergy' and other related fields in ‘MedicationMention’ > >> > >> I have also tried including RelationSubPipe.piper file from > >> cakes-relation-extractor to my Full.piper files in cakes-web-rest > module. > >> But I don’t see any difference this made as I am yet not able to figure > >> out the relation among medication entity and its frequency, dosage etc. > >> > >> We are relatively new to this. Please advise on how to proceed further. > >> > >> > >> Thanks, > >> Honey G. >
