Hi all, I’m trying to add simple and lightweight negation detection to the fast UMLC CUI annotation piper (please see below).
I understand that the assertion detection module works module great but that requires dependency parsing which would be computationally expensive for large-scale projects. My ideal output would contain offset, term, preferred term, CUI, code, negation. So not a lot of extra information. (1) Is there any lightweight cTAKES negation detection module with minimal dependencies? (2) If so, what would be the best way to add that module to the HelloWorldCui.piper bellow? load org/apache/ctakes/core/pipeline/DefaultTokenizerPipeline.piper add ContextDependentTokenizerAnnotator addDescription POSTagger set ctakes.umlsuser=USER ctakes.umlspw=PASSWORD add DefaultJCasTermAnnotator collectCuis Thanks so much! Masoud
