Before I dig into the error and all enigmas uima, how are you building the jar? Also, what do you need from ctakes? If you do not need the higher functions for relations, temporal information, coreferences ... or the sideline items like smoking status, drug-ner, ytex (a big one) ... then you can probably create a jar that is about half that size just by getting rid of their libraries and dependencies.
Sean -----Original Message----- From: Erin Gustafson [mailto:erin.gustaf...@northwestern.edu] Sent: Thursday, June 08, 2017 11:33 AM To: dev@ctakes.apache.org Subject: RE: Pipeline executable Within org.apache.ctakes.typesystem itself there are no classes, but in org.apache.ctakes.typesystem.type.textspan I do see Segment.class. The jar is indeed huge (1.14 GB). Open to any suggestions for the most efficient way to go about this! Erin -----Original Message----- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Thursday, June 08, 2017 10:24 AM To: dev@ctakes.apache.org Subject: RE: Pipeline executable Hi Erin, Do you have any classes in ctakes-typesystem (org.apache.ctakes.type.system)? It could be that jcasgen needs to be run. Just out of curiosity, how huge is your jar file? You may be able to decrease the size ... Sean -----Original Message----- From: Erin Gustafson [mailto:erin.gustaf...@northwestern.edu] Sent: Thursday, June 08, 2017 11:16 AM To: dev@ctakes.apache.org Subject: Pipeline executable Hi all, I have a project that contains a series of classes to build cTAKES pipelines. I've been successfully running the pipelines myself within an IDE, but would like to be able to provide collaborators with an executable jar file to run our pipeline. So far, I've managed to build a jar that will start running the pipeline from the command line. It successfully initializes the annotators but throws an exception when processing begins: Exception in thread "main" java.lang.IllegalStateException: org.apache.uima.resource.ResourceInitializationException: Undefined type "org.apache.ctakes.typesystem.type.textspan.Segment" in type priority list. (Descriptor: <unknown>) Any thoughts about how to resolve this error? Let me know if I can provide any more information.. Thanks, Erin
