Hi Dima, Great question. This is part of the change for v.4.0
You will need to pick up the new dictionary (sno_rx_16ab.zip) from sourceforge: https://sourceforge.net/projects/ctakesresources/files/ and unzip it in your resources/ directory. Sno_rx_16ab is a new database in hsqldb 2.3.4 format containing the standard ctakes tuis, cuis, snomedct and rxnorm from the umls 2016ab release. The ctakes.apache.org website will have an updated dictionary-fast link when we are ready to release 4.0. The pom in trunk will be switched to automatically grab that resource when you compile as soon as it is published from sourceforge (i.e. maven can find it). I apologize for not sending out this information earlier. A few items have fallen through the cracks wrt the 4.0 rc, trunk 4.0.1 updates, sourceforge publication, etc. There are running edits on the instructions for future releases ... I hope that we capture everything. Sean -----Original Message----- From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] Sent: Tuesday, April 11, 2017 12:36 PM To: cTAKES Developer list Subject: dictionary lookup error Hello, After a recent ‘svn up’, a simple pipeline involving dictionary lookup started to fail. It fails to locate a file: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml. The pipeline is here: https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_dmitriydligach_ctakes-2Dmisc_blob_master_src_main_java_org_apache_ctakes_pipelines_BasicAnnotations.java&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=UlWU5Cj26g3v3pPKCjO8HMaLfwabkSR_pSDvc7er58A&s=DJO0GqRKzDgpx_rGUTN6yTFJX5xeB7B4oAiJoNRfNno&e= Any thoughts on what might be going wrong? Thank you in advance. Here’s the full error message: Exception in thread "main" org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:271) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:170) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:407) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:256) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:429) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:186) at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711) at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207) at org.apache.ctakes.pipelines.BasicAnnotations.main(BasicAnnotations.java:67) Caused by: org.apache.uima.resource.ResourceInitializationException at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:266) ... 12 more Caused by: java.io.FileNotFoundException: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.<init>(FileInputStream.java:138) at org.apache.ctakes.core.resource.FileLocator.getAsStream(FileLocator.java:61) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:128) ... 13 more Dima
