Thank you so much, this really helped. I have been dealing with this for hours. Solved the issue!
Thanks again Leander > On 16 Mar 2017, at 22:12, Finan, Sean <sean.fi...@childrens.harvard.edu> > wrote: > > Hi Leander, > > I thought that I was saving people problems by preselecting English as the > default ... But you are the second person to request another language. > > I hardcoded the gui to only fetch English synonyms. I will change this > before it goes into the official release. It is already set up for it, but I > never exposed the control. > > In the class MainPanel line 179 or so has: > Collections.singletonList( "ENG" ), > > I think that umls uses iso 639-2, so you can swap "ENG" with "GER". Iso > 639-3 uses DEU, so just in case one or two vocabularies have switched you > could catch both with Arrays.asList( "GER", "DEU" ). > > That should do it, but let me know if it doesn't work. > > Sean > > > -----Original Message----- > From: Leander Melms [mailto:me...@students.uni-marburg.de] > Sent: Thursday, March 16, 2017 4:43 PM > To: dev@ctakes.apache.org > Subject: Re: Trouble with the DictionaryTool > > Sean, > > apologies for disturbing again. I'm trying to populate the db with a german > translation of various sources (such as MesH, DIMDICD, ..). The UMLS install > succeeded but whenever running the dictionary guy, it only fills the db with > the english concepts (from RxNorm I think?). > > How is the data fetched from the UMLS install? Is it possible to use a > different language than English? > > I had a quick look at the source code but couldn't find out where the problem > is. Any hints are greatly appreciated. > > Leander > > >> On 16 Mar 2017, at 10:50, Leander Melms <me...@students.uni-marburg.de> >> wrote: >> >> Sorry, >> >> Should have thought before writing again.. I imported the GUI under >> main.java and had to fix the imports. >> >> It's working now as expected! >> >>> Am 16.03.2017 um 08:37 schrieb Leander Melms >>> <me...@students.uni-marburg.de>: >>> >>> Hi Sean, >>> >>> Thank you for the fast reply! I imported the dictionary gui into eclipse >>> (as standalone), added the lib folder to the build path and tried to >>> compile with Java 8. Eclipse complained about ~ 200 errors. >>> >>> What am I missing here? >>> >>> Leander >>> >>>> Am 15.03.2017 um 19:16 schrieb Finan, Sean >>>> <sean.fi...@childrens.harvard.edu>: >>>> >>>> Hi Leander. I think that you would be better off using the dictionary >>>> gui. It is also in sandbox, and though it was originally a wrapper >>>> interface for the cli tool, it has since been the more active project with >>>> new features and bug fixes. >>>> >>>> -----Original Message----- >>>> From: Leander Melms [mailto:me...@students.uni-marburg.de] >>>> Sent: Wednesday, March 15, 2017 1:22 PM >>>> To: dev@ctakes.apache.org >>>> Subject: Trouble with the DictionaryTool >>>> >>>> Hi, >>>> >>>> I've followed the instructions found in this mailing list to set up and >>>> run the dictionary tool. I made a quick summary of what I found: >>>> >>>> Change the configuration at /data/default/CtakesSources.txt to include >>>> ICD10 or other extensions; there can be zero or more sources. >>>> Copy ctakesumls.properties and ctakesumls.script from >>>> resource/memdbtemplate to a new folder to put the new UMLS DB Run >>>> DictionaryCreator2 java -cp dictionarytool.jar;lib/* >>>> org.apache.ctakes.dictionarytool.DictionaryCreator2 >>>> -umls "/2015AB/META" >>>> -atui ./data/tiny/CtakesAnatTuis.txt -tui >>>> ./data/tiny/CtakesSnomedTuis.txt -src ./data/tiny/CtakesSources.txt >>>> -fd ./data/tiny -db jdbc:hsqldb:file:pathTonewDB/snorx2015 >>>> -tbl CUI_TERMS >>>> Run CodeMapCreator >>>> java -cp dictionarytool.jar;lib/* >>>> org.apache.ctakes.dictionarytool.CodeMapCreator >>>> -umls "/2015AB/META" >>>> -atui ./data/tiny/CtakesAnatTuis.txt -db >>>> jdbc:hsqldb:file:pathTonewDB/snorx2015 >>>> -fd ./data/tiny >>>> -tbl CUI_TERMS >>>> Copy new DB files to new location and create a copy of >>>> cTakesHsql.xml and update dictionary location >>>> >>>> I'm failing at step 3 when running the DictionaryCreator2 with the output: >>>> >>>> lib/hsqldb.jar: warning: cannot start debugger; debugging mode >>>> disabled >>>> lib/hsqldb.jar: line 1: $'PK\003\004': command not found >>>> lib/hsqldb.jar: line 2: META-INF/ PK: No such file or directory >>>> lib/hsqldb.jar: line 3: syntax error near unexpected token `(' >>>> lib/hsqldb.jar: line 3: p < _ xMETA-INF/MANIFEST.MFm Ok! c{ f o m >>>> {(. \5 uf 5ڙR N 8F+w @ V %m" >>>> =] / U { D Hc 9eٹ =b tf0 Υ &[ U m g& w >>>> @ p % )` kQe z{' w ͩ H+. /f՜ Z ] Q S /vHG ٔ e h[ -F}PK' >>>> >>>> The path should be correctly pointing to the UMLS folder. I'm running Mac >>>> OS Sierra. >>>> >>>> Any help is greatly appreciated. >>>> >>>> Leander >>>> >>>> >>> >>> >> >> > >
