I have written a java class that creates the pipeline using the
AggregatePlaintextFastUMLSProcessor.xml file. I changed the
DictionaryDescriptorFile fileUrl parameter in the UmlsLookupAnnotator.xml to
file:org/apache/ctakes/dictionary/lookup/fast/custom2.xml. So, as you can see,
it uses the codingScheme custom2, but no code is returned.
cough : UmlsConcept
codingScheme: "custom2"
code: <null>
oid: "null#custom2"
oui: <null>
score: 0.0
disambiguated: false
cui: "C0010200"
tui: "T184"
preferredText: "Coughing"
On 14/03/2017, 10:24, "Finan, Sean" <sean.fi...@childrens.harvard.edu> wrote:
How are you creating your pipeline? Do you run the command line script,
run with an xml descriptor file in the CPE gui, or have you written a java
class that creates the pipeline? DictionaryDescriptor points ctakes to your
custom configuration file. Without it ctakes is probably defaulting to the
2011ab dictionary.
