Thanks Shahid, when you built the pipline using xml descriptor it worked ? whats your xml schema ?
On Thu, Feb 16, 2017 at 3:22 PM, shahid ashraf <sha...@trialx.com> wrote: > Hi > > I have tried jcaspool too but it did not worked for me as well (Same > Error). I did not tried to use after spending some time... not an expert on > java... so i just used the Descriptor (XML) based code to build pipeline > and created a CAS Pool. > Let me know if you are able to get anything ... > > Here is the link from which you can build the descriptor XML based pipeline > with CASPool. > > https://uima.apache.org/d/uimaj-current/tutorials_and_ > users_guides.html#ugr.tug.applications.multi_threaded > > > > On Thu, Feb 16, 2017 at 6:03 PM, Alaa al Barari <alaa.albar...@gmail.com> > wrote: > > > Hi, > > > > anyone used jcasPool before ? is it working with you ? any ideas, > insights > > .... I have this issue : > > aggregateBuilder = Pipeline.getAggregateBuilder(); > > pipeline = aggregateBuilder.createAggregate(); > > jCasPool = new JCasPool(10, pipeline); > > > > > > then > > > > JCas jcas = jCasPool.getJCas(0); > > jcas.setDocumentText(text); > > pipeline.process(jcas); > > > > but it throws the following exception when calling second block of code > > twice : > > > > Info: Annotator processing failed. > > Severe: org.apache.uima.analysis_engine.AnalysisEngineProcessException > : > > Annotator processing failed. > > at > > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. > > callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391) > > at > > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. > > processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296) > > at > > org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator. > > processUntilNextOutputCas(ASB_impl.java:567) > > at > > org.apache.uima.analysis_engine.asb.impl.ASB_impl$ > > AggregateCasIterator.<init>(ASB_impl.java:409) > > at > > org.apache.uima.analysis_engine.asb.impl.ASB_impl. > > process(ASB_impl.java:342) > > at > > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. > > processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267) > > at > > org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process( > > AnalysisEngineImplBase.java:267) > > at > > org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process( > > AnalysisEngineImplBase.java:280) > > at com.whatever.getCode(Manager.java:217) > > at com.whatever.analyzeText(Manager.java:122) > > at com.whatever.analyzeCode(GenericResource.java:56) > > at sun.reflect.GeneratedMethodAccessor220.invoke(Unknown Source) > > at > > sun.reflect.DelegatingMethodAccessorImpl.invoke( > > DelegatingMethodAccessorImpl.java:43) > > at java.lang.reflect.Method.invoke(Method.java:498) > > at > > org.glassfish.jersey.server.model.internal. > ResourceMethodInvocationHandle > > rFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81) > > at > > org.glassfish.jersey.server.model.internal. > AbstractJavaResourceMethodDisp > > atcher.invoke(AbstractJavaResourceMethodDispatcher.java:125) > > at > > org.glassfish.jersey.server.model.internal. > JavaResourceMethodDispatcherPr > > ovider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherPr > > ovider.java:152) > > at > > org.glassfish.jersey.server.model.internal. > AbstractJavaResourceMethodDisp > > atcher.dispatch(AbstractJavaResourceMethodDispatcher.java:91) > > at > > org.glassfish.jersey.server.model.ResourceMethodInvoker. > > invoke(ResourceMethodInvoker.java:346) > > at > > org.glassfish.jersey.server.model.ResourceMethodInvoker. > > apply(ResourceMethodInvoker.java:341) > > at > > org.glassfish.jersey.server.model.ResourceMethodInvoker. > > apply(ResourceMethodInvoker.java:101) > > at org.glassfish.jersey.server.ServerRuntime$1.run( > ServerRuntime.java:224) > > at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) > > at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) > > at org.glassfish.jersey.internal.Errors.process(Errors.java:315) > > at org.glassfish.jersey.internal.Errors.process(Errors.java:297) > > at org.glassfish.jersey.internal.Errors.process(Errors.java:267) > > at > > org.glassfish.jersey.process.internal.RequestScope. > > runInScope(RequestScope.java:317) > > at org.glassfish.jersey.server.ServerRuntime.process( > > ServerRuntime.java:198) > > at > > org.glassfish.jersey.server.ApplicationHandler.handle( > > ApplicationHandler.java:946) > > at org.glassfish.jersey.servlet.WebComponent.service( > > WebComponent.java:323) > > at > > org.glassfish.jersey.servlet.ServletContainer.service( > > ServletContainer.java:372) > > at > > org.glassfish.jersey.servlet.ServletContainer.service( > > ServletContainer.java:335) > > at > > org.glassfish.jersey.servlet.ServletContainer.service( > > ServletContainer.java:218) > > at > > org.apache.catalina.core.StandardWrapper.service( > > StandardWrapper.java:1682) > > at > > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter( > > ApplicationFilterChain.java:344) > > at > > org.apache.catalina.core.ApplicationFilterChain.doFilter( > > ApplicationFilterChain.java:214) > > at com.thetransactioncompany.cors.CORSFilter.doFilter( > CORSFilter.java:208) > > at com.thetransactioncompany.cors.CORSFilter.doFilter( > CORSFilter.java:274) > > at > > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter( > > ApplicationFilterChain.java:256) > > at > > org.apache.catalina.core.ApplicationFilterChain.doFilter( > > ApplicationFilterChain.java:214) > > at > > org.apache.catalina.core.StandardWrapperValve.invoke( > > StandardWrapperValve.java:316) > > at > > org.apache.catalina.core.StandardContextValve.invoke( > > StandardContextValve.java:160) > > at > > org.apache.catalina.core.StandardPipeline.doInvoke( > > StandardPipeline.java:734) > > at > > org.apache.catalina.core.StandardPipeline.invoke( > > StandardPipeline.java:673) > > at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) > > at > > org.apache.catalina.core.StandardHostValve.invoke( > > StandardHostValve.java:174) > > at > > org.apache.catalina.connector.CoyoteAdapter.doService( > > CoyoteAdapter.java:357) > > at > > org.apache.catalina.connector.CoyoteAdapter.service( > > CoyoteAdapter.java:260) > > at > > com.sun.enterprise.v3.services.impl.ContainerMapper. > > service(ContainerMapper.java:188) > > at > > org.glassfish.grizzly.http.server.HttpHandler.runService( > > HttpHandler.java:191) > > at > > org.glassfish.grizzly.http.server.HttpHandler.doHandle( > > HttpHandler.java:168) > > at > > org.glassfish.grizzly.http.server.HttpServerFilter. > > handleRead(HttpServerFilter.java:189) > > at > > org.glassfish.grizzly.filterchain.ExecutorResolver$ > > 9.execute(ExecutorResolver.java:119) > > at > > org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter( > > DefaultFilterChain.java:288) > > at > > org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart( > > DefaultFilterChain.java:206) > > at > > org.glassfish.grizzly.filterchain.DefaultFilterChain.execute( > > DefaultFilterChain.java:136) > > at > > org.glassfish.grizzly.filterchain.DefaultFilterChain.process( > > DefaultFilterChain.java:114) > > at > > org.glassfish.grizzly.ProcessorExecutor.execute( > ProcessorExecutor.java:77) > > at > > org.glassfish.grizzly.nio.transport.TCPNIOTransport. > > fireIOEvent(TCPNIOTransport.java:838) > > at > > org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent( > > AbstractIOStrategy.java:113) > > at > > org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0( > > WorkerThreadIOStrategy.java:115) > > at > > org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$ > > 100(WorkerThreadIOStrategy.java:55) > > at > > org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$ > > WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135) > > at > > org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork( > > AbstractThreadPool.java:564) > > at > > org.glassfish.grizzly.threadpool.AbstractThreadPool$ > > Worker.run(AbstractThreadPool.java:544) > > at java.lang.Thread.run(Thread.java:745) > > Caused by: java.lang.NullPointerException > > at com.mysql.jdbc.ResultSetImpl.checkColumnBounds( > ResultSetImpl.java:766) > > at com.mysql.jdbc.ResultSetImpl.getStringInternal( > ResultSetImpl.java:5241) > > at com.mysql.jdbc.ResultSetImpl.getString(ResultSetImpl.java:5163) > > at > > org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory. > > getStringCodesWithDesc(JdbcConceptFactory.java:409) > > at > > org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory. > > createConcept(JdbcConceptFactory.java:294) > > at > > org.apache.ctakes.dictionary.lookup2.concept.AbstractConceptFactory. > > createConcepts(AbstractConceptFactory.java:37) > > at > > org.apache.ctakes.dictionary.lookup2.concept.UmlsJdbcConceptFactory. > > createConcepts(UmlsJdbcConceptFactory.java:55) > > at > > org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. > process( > > AbstractJCasTermAnnotator.java:179) > > at > > org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process( > > JCasAnnotator_ImplBase.java:48) > > at > > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. > > callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375) > > > > > > -- > with Regards > Shahid Ashraf > -- Eng Alaa Al-Barari phone 0599297470
