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On 2/15/17, 9:22 AM, "shahid ashraf" <sha...@trialx.com> wrote:
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______________________________________________________________________
Sean .... Anything on this...
On Wed, Feb 15, 2017 at 3:21 PM, shahid ashraf <sha...@trialx.com> wrote:
> To Add more here is the query on dictionary
>
>
> SELECT * FROM "PUBLIC"."CUI_TERMS" WHERE "TEXT" LIKE 'herpes zoster'
>
> 42338
>
> 1
>
> 2
>
> herpes zoster
>
> zoster
>
>
> On Wed, Feb 15, 2017 at 3:14 PM, shahid ashraf <sha...@trialx.com> wrote:
>
>> Hi Sean
>>
>> I have created a dictionary with 6-7 vocabs with filtered semtypes. that
>> includes *[Disease or Syndrome]*
>> When i search the term "herpes zoster" i am getting multiple cuis e.g
>>
>> Ctakes matches: *"herpes" *to <refsem:UmlsConcept xmi:id="133"
>> codingScheme="CHV" code="6101" score="0.0" disambiguated="false" cui="
>> C0019340" tui="T047" preferredText="Herpes NOS"/>
>> <refsem:UmlsConcept xmi:id="143" codingScheme="MDR" code="10019944" score
>> ="0.0" disambiguated="false" cui="C0019340" tui="T047"
preferredText="Herpes
>> NOS"/>
>> and *"herpes zoster"*
>> <refsem:UmlsConcept xmi:id="97" codingScheme="SNOMEDCT_US" code="19551004
>> " score="0.0" disambiguated="false" cui="C0042338" tui="T005"
>> preferredText="Human herpesvirus 3"/>
>> <refsem:UmlsConcept xmi:id="67" codingScheme="MSH" code="D014645" score="
>> 0.0" disambiguated="false" cui="C0042338" tui="T005" preferredText="Human
>> herpesvirus 3"/>
>>
>> My Question is why not it returned the "herpes zoster" match to MDR
>> instead of MSH. When i did few greps on MRCONSO both vocabs have "herpes
>> zoster(C0019340)"
>>
>> grep '*C0042338*' MRCONSO.RRF | grep "Herpes zoster"
>>
*C0042338|ENG|S|L0019360|PF|S0377939|Y|A2933029|479641014|19551004||SNOMEDCT_US|SY|19551004|Herpes
>> zoster|9|N|256|*
>>
C0042338|ENG|S|L0019365|PF|S0048120|Y|A26631650||M0022527|D014645|MSH|ET|D014645|Herpes
>> zoster Virus|0|N|256|
>>
C0042338|ENG|S|L0019365|VO|S0048121|Y|A0067793||M0022527|D014645|MSH|PM|D014645|Herpes
>> zoster Viruses|0|N|256|
>>
C0042338|ENG|S|L0028839|PF|S0068313|Y|A26639692||M0022527|D014645|MSH|ET|D014645|Ocular
>> Herpes zoster Virus|0|N|256|
>> C0042338|ENG|S|L1105581|PF|S1327080|Y|A3286316|479640010|195
>> 51004||SNOMEDCT_US|SY|19551004|HZ - Herpes zoster virus|9|N|256|
>> C0042338|ENG|S|L1105582|PF|S1327081|Y|A3286317|479637010|195
>> 51004||SNOMEDCT_US|SY|19551004|HZ - Herpes zoster|9|N|256|
>> ➜ * META grep 'C0019360' MRCONSO.RRF | grep "MDR"*
>>
*C0019360|ENG|S|L0019360|VC|S0377939|N|A0421203|||10019974|MDR|PT|10019974|Herpes
>> zoster|3|N|256|*
>>
C0019360|ENG|S|L0019360|VC|S0377939|N|A25726963|||10019974|MDR|LLT|10019974|Herpes
>> zoster|3|N|256|
>>
C0019360|ENG|S|L0019360|VO|S0660815|Y|A25702167|||10019974|MDR|LLT|10019982|Herpes
>> zoster NOS|3|N|256|
>> C0019360|ENG|S|L0036967|PF|S0085594|N|A25745497|||10019974|
>> MDR|LLT|10040555|Shingles|3|N|256|
>> C0019360|ENG|S|L0043516|PF|S0100676|N|A25732030|||10019974|
>> MDR|LLT|10067526|Zona|3|N|256|
>>
>> 2) .. Also how i can prioritize this to return MDR based CUI ???
>>
>> --
>> with Regards
>> Shahid Ashraf
>>
>
>
>
> --
> with Regards
> Shahid Ashraf
>
--
with Regards
Shahid Ashraf
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